PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35273-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 325aa    MW: 34828.1 Da    PI: 4.7127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35273-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18104154155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  TRIUR3_35273-P1 104 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 154
                      5799******.**********843...4*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.52E-29104163No hitNo description
Gene3DG3DSA:3.30.730.104.3E-28105162IPR001471AP2/ERF domain
PROSITE profilePS5103221.535105162IPR001471AP2/ERF domain
PfamPF008471.5E-10105154IPR001471AP2/ERF domain
SMARTSM003803.7E-33105168IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20105162IPR016177DNA-binding domain
PRINTSPR003672.7E-8106117IPR001471AP2/ERF domain
PRINTSPR003672.7E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLSSSELSSP LFQEGILADD EEARWSVRMR VGAVWRARLG TGRDRDVVGC SFPPSHMHDA  60
SRKMNFSSYF FSSSSSSSSS SDKKSSSSKR RQQAAQQQPD SNPTRYLGVR RRPWGRYAAE  120
IRDPATKDRH WLGTFDTAEE AAVAYDRAAR SLRGVRARTN FAYPDLPPGS SITPYLSPDL  180
TSDDNAVQLL QPFYADPVPP LPTHQPAAGG GGQDIGSEYL YGGAPDMSSL MDDIAMPDDL  240
PMIDGGGDMD FSMYGVGGNG ATAAGGGGWC DASELGAYSS TPGGGHGVYF EEGYVHSPLF  300
SPMPAADDAR ADGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17106161662ATERF1
3gcc_A3e-17106161662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282751e-105KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188896.11e-145ethylene-responsive transcription factor LEP-like
TrEMBLM7ZEF30.0M7ZEF3_TRIUA; Ethylene-responsive transcription factor LEP
STRINGTRIUR3_35273-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-32ERF family protein