PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35266-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 436aa    MW: 46390.4 Da    PI: 6.9912
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35266-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB143.26e-4522113192
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                      vreqdr++Pianv+rim+++lPa+akis++ake +qecvsefisfvt+ea+++c+ ++rk++n++d++wal  lGf+dyv pl+v+lk+ r+
  TRIUR3_35266-P1  22 VREQDRLMPIANVIRIMRRALPAHAKISDEAKEAIQECVSEFISFVTGEANERCRMQRRKAVNAEDIVWALNRLGFDDYVVPLSVFLKRMRD 113
                      59****************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-4118113IPR009072Histone-fold
SuperFamilySSF471139.78E-3125113IPR009072Histone-fold
PfamPF008081.3E-222992IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-125674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-127593No hitNo description
PRINTSPR006151.7E-1294112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MENDGVPNGP AAPAPTQATP VVREQDRLMP IANVIRIMRR ALPAHAKISD EAKEAIQECV  60
SEFISFVTGE ANERCRMQRR KAVNAEDIVW ALNRLGFDDY VVPLSVFLKR MRDPDAGTVA  120
LEVASLTTIV AAPAPIPAVA RRHALAVVVV PSTAVSTLPC CPLRRRHEQL LTPALAAVLS  180
TAPNPLIERT QPPERFVERH RRHVVELLDA GDDGEEAIRH RIQQLLDKCC VASVSPRLAY  240
LAAIDASLPP YTSSSSPSAI FIRSNSPRSV SSLAARTRSA PTNLTFTESH TSLTVSFVDT  300
CSSTSSGNAP RSNARAILSF LAFTVASPSV TASHTVQMQQ GIYGPRAPVH GYAVGMAPVR  360
ANVGGQYQVF VGERVMGQQY YGYGEGAYGA GSSNGGAGIG DQESSSNGVP APGEGKGEPE  420
PEPTAEEPQD KPVQSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4422113697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178161.12e-72nuclear transcription factor Y subunit B-8-like
TrEMBLM7ZF840.0M7ZF84_TRIUA; Nuclear transcription factor Y subunit B-6
STRINGTRIUR3_35266-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.24e-46nuclear factor Y, subunit B6