PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35215-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 399aa    MW: 43325.8 Da    PI: 8.5026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35215-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05828323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++Cgk F r  nL+ H r H
  TRIUR3_35215-P1  8 CEICGKGFQRDQNLQLHRRGH 28
                     *******************88 PP
2zf-C2H211.60.0008583105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H + +
  TRIUR3_35215-P1  83 WKCDKCSKKYAVQSDWKAHSKIC 105
                      58*****************9876 PP
3zf-C2H211.90.00068113131523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr++++ +H   +
  TRIUR3_35215-P1 113 DCGTVFSRRDSFITHRAFC 131
                      9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.46E-8528No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.46E-878103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRGSK EVVRKKVYIC PEASCVHHDP  60
SRALGDLTGI KKHFFRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTVFSR  120
RDSFITHRAF CDALTEESNK AISGGGLPLP PIAHAQHHAM LYSPHDLMQQ HHHQELAAFQ  180
DHQHQVMQQH CNFDVKPEMQ PWPTMPYDDV HHPLLQPLCS ATAQSSATSV PTPTQQQLPA  240
AAAHLSATAL LQKAAQMGAT IGGAGAGGAG VHYTQMAGSA TSATGSATFG LGLSCLSNQQ  300
MMSLARTASQ GRSGEEGGAS GGANDGMTRD FLGLRAFSHR DILGLAGFDS SCMGAAVNTA  360
GNNTNMAPCY EPQQQGQPQP QPPQQQSSNE PWHGMGSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3479137361Zinc finger protein JACKDAW
5b3h_F4e-3479137361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13245KLKQRGSKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094530.0BT009453.1 Triticum aestivum clone wlmk8.pk0027.b6:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184321.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F54e-99IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM8AD360.0M8AD36_TRIUA; Zinc finger protein MAGPIE
STRINGTRIUR3_35215-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.12e-80indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]