PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35201-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 841aa    MW: 89031.4 Da    PI: 4.4183
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35201-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.22.1e-11667691125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr l++YPrGA +V+Ca C t+
  TRIUR3_35201-P1 667 CGSCRELIAYPRGAVHVQCAACGTI 691
                      **********************997 PP
2zf-LSD139.41e-12705729125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg C +lL+YP+GAp+V+C+lC +V
  TRIUR3_35201-P1 705 CGRCEILLMYPFGAPAVKCSLCLFV 729
                      **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-13664694IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-9667691IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.4E-7703730IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-10705729IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MVSEEAGRLP AALESMDANR PTAPAPPTLP LKSEPEGLLP QQHRRPPWPT VLPGCENFEH  60
SQPPSPRPPQ VEAAHGLQDA AQTNAIAVTA EEPGAPSAWK SDSEGSFEVA MHIPLSSPTE  120
AEPCSPDMAP PGFEKFKFSW PPLPPPNLSV KTAHSLLNPA VPEGVAKPLP VLETMDTKAV  180
AARNLPLPSS ESGAEEPLWQ PLLRSPSPIT QAEPCSPDMP PPGFENFKLS CMPLSNENTY  240
ASSDVIAAKA VAVAPEEAVL PVPTLKAIDV ETDSACNLLP PLGSKLEGLL KQPSLRSTTP  300
VAESGPCSPE IAPPGFESFR LSWQPSSTPP SGTAYIMPDA AVMPLPVTLE EAAGSPPALE  360
AMDVDMNAIH PLTVPLESGV EGSLQGPQPR PPSPILQDVP SSPDMAPPGF ENFKSSWLLL  420
PSPVFSQTAY TLHDSTTTIA EYVLEEAAQL SPALEAIDVK METSPESGAE GSLPQQLHWR  480
PSPKENSTAC SPEMVPSGHE NLQPLPYPAF LPQVQTPDVV ATGVVIGALD QVHHPAPVLG  540
TIEEGTSPIL SPPLEGGSLP QLEPQMNSVT AHVVDTPTHV PTTDCVAVNS EGTVLPPPAL  600
QAMVTNMDSA TTSLPRLENG AEGSLPQLRQ QSSSPNVQAA PCSLDAVELL PPPPPPFVNK  660
EVGQMVCGSC RELIAYPRGA VHVQCAACGT INLVLEAHEV GNVHCGRCEI LLMYPFGAPA  720
VKCSLCLFVT EIGERNVRRR ISVQQVTPHQ QELANQSPEP QGVTTLEEKV LGGFMLPFIK  780
RAKATVSKQT EVQILFRMGL VLHLLGKGNP VKSIPQCDKL AKVLQGEDGH DVDFIDPGAI  840
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157530.10.0fibrous sheath CABYR-binding protein-like
TrEMBLM7YDX50.0M7YDX5_TRIUA; Uncharacterized protein
STRINGTRIUR3_35201-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-30lsd one like 2