PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34993-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 490aa MW: 56816.3 Da PI: 6.8932

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34993-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.3	1.1e-27	20	107	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+++GFs+r+ +++k k++ +i +rtf+Cs++g r+e+k++ ek + +r+etr+gC+a++k++++ +g ++v+++++ HnH+la TRIUR3_34993-P1 20 SFYNKYAYSMGFSIRRGNQHKVKNSSTIQQRTFTCSRQGVRAEDKRE-EKFSYSRPETRCGCDARMKISLN-NGIYYVYEFKEAHNHSLA 107 5*****************************************999.9999***************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	20	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-30	229	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
IEKGVPKLGM QFLSEEEAYS FYNKYAYSMG FSIRRGNQHK VKNSSTIQQR TFTCSRQGVR 60 AEDKREEKFS YSRPETRCGC DARMKISLNN GIYYVYEFKE AHNHSLATGN MSQYLRSHRK 120 VTEAQLANAE VAKSVGILNK ATIDLMTKET CGPENLGFIS TDMKNHLYSK RTLKAKVGDT 180 GGVLEYMEKK ISEDVKFFYS IQVDEDDLRT NIFWTDSKMV SDYALFGDVI CFDTTYRKLD 240 DGHPFGLIVG VNNHKKTIVF GAALLYDETA ESFAWLFRTF LTIMSGKHPH TILTDEDAAM 300 AKAIRSVLPH SHHRLCVWHM NQNAIKHLGG VVTDYKKFNA DFQHCIYDIE EEDEFISAWN 360 EMLDNTQRSE SINNELKRYI SSKYDMLTFF EHFERLVADK RFEEVRCDFK ATQSTPKLKA 420 ESYMLRQAST TYTPPIFKMF QEQVLRTLNY DTFLCDDSDT EEKVYKVKFH EKLAEEVEKC 480 LKHRSDPDTG

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

IEKGVPKLGM QFLSEEEAYS FYNKYAYSMG FSIRRGNQHK VKNSSTIQQR TFTCSRQGVR  60
AEDKREEKFS YSRPETRCGC DARMKISLNN GIYYVYEFKE AHNHSLATGN MSQYLRSHRK  120
VTEAQLANAE VAKSVGILNK ATIDLMTKET CGPENLGFIS TDMKNHLYSK RTLKAKVGDT  180
GGVLEYMEKK ISEDVKFFYS IQVDEDDLRT NIFWTDSKMV SDYALFGDVI CFDTTYRKLD  240
DGHPFGLIVG VNNHKKTIVF GAALLYDETA ESFAWLFRTF LTIMSGKHPH TILTDEDAAM  300
AKAIRSVLPH SHHRLCVWHM NQNAIKHLGG VVTDYKKFNA DFQHCIYDIE EEDEFISAWN  360
EMLDNTQRSE SINNELKRYI SSKYDMLTFF EHFERLVADK RFEEVRCDFK ATQSTPKLKA  420
ESYMLRQAST TYTPPIFKMF QEQVLRTLNY DTFLCDDSDT EEKVYKVKFH EKLAEEVEKC  480
LKHRSDPDTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1NVU6	0.0	T1NVU6_TRIUA; Uncharacterized protein
STRING	TRIUR3_34993-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-84	FAR1-related sequence 5