PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34835-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 126aa MW: 14877.6 Da PI: 8.764 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.9 | 1.8e-27 | 1 | 117 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 td e++ yL++k +g++l++ ++ike+d+++ +P + ++k+ ++++ wy Fs+rd+ky++g+r+ r++ Wk++gk+++vl+k++ ++g TRIUR3_34835-P1 1 TDAEII-WYLERKYHGHPLPV-NFIKEFDVFEDHPDTVQEKYGESQEgVWYVFSSRDRKYKNGTRPVRSVG-TAWKSSGKEEDVLDKNNVKIGR 91 799999.9*************.99**************965555444499******************755.88******************** PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 +tL+f g++pkg++t W ++eyr+ TRIUR3_34835-P1 92 VNTLTFKLGHQPKGTSTPWRLKEYRM 117 ************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-28 | 1 | 120 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-10 | 1 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.106 | 1 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
TDAEIIWYLE RKYHGHPLPV NFIKEFDVFE DHPDTVQEKY GESQEGVWYV FSSRDRKYKN 60 GTRPVRSVGT AWKSSGKEED VLDKNNVKIG RVNTLTFKLG HQPKGTSTPW RLKEYRMEKY 120 QEDPNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swm_B | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swm_C | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swm_D | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swp_A | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swp_B | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swp_C | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
3swp_D | 7e-19 | 1 | 117 | 29 | 145 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229598.3 | 4e-34 | NAC domain-containing protein 67 | ||||
TrEMBL | A0A3B6KRZ6 | 1e-83 | A0A3B6KRZ6_WHEAT; Uncharacterized protein | ||||
TrEMBL | T1NVE9 | 1e-88 | T1NVE9_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_34835-P1 | 2e-89 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 3e-21 | NAC domain containing protein 25 |