PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_34833-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 191aa MW: 20509.3 Da PI: 10.7164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G tW+++a+ g++R++k+c++rw +yl TRIUR3_34833-P1 17 KGLWSPEEDERLYTRITRHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.1 | 9.5e-14 | 72 | 113 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + k lG++ W+ Ia +m+ gRt++++k++w++ TRIUR3_34833-P1 72 PISKREEETIISLQKSLGNR-WSVIAGKMP-GRTDNEIKNYWNS 113 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.962 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-28 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.14E-11 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 16.076 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-12 | 69 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.16E-10 | 72 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-11 | 72 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
ASQADVGGGV EAHKERKGLW SPEEDERLYT RITRHGVSTW SSVAQLAGLR RSGKSCRLRW 60 MNYLRPDLKK EPISKREEET IISLQKSLGN RWSVIAGKMP GRTDNEIKNY WNSRIRKRQT 120 LSTGGGKGDS GLAKQGDLPA ADDKASVLAG PRGKEPVSSM ASGATVPPVP ARFPLFACQL 180 LGGGGGAAAI A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 17 | 118 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-126 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183575.1 | 1e-118 | myb-related protein 305-like | ||||
TrEMBL | T1NVE7 | 1e-135 | T1NVE7_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_34833-P1 | 1e-136 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-47 | myb domain protein 86 |