PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34646-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 186aa MW: 19495 Da PI: 10.7318 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.7e-09 | 47 | 88 | 4 | 45 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 +++k+q +Lee+F+ ++ ++ ++ + LA++lgL rqV TRIUR3_34646-P1 47 NLRMSKDQSAVLEECFKTHSALNPKQNTALANRLGLRPRQVE 88 56789************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-7 | 25 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-10 | 30 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.55E-5 | 45 | 89 | No hit | No description |
Pfam | PF00046 | 4.0E-6 | 48 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSPSTSPKSG ISAGTKRGLE HTSSGVFPAA SSDEDDGGGD GAGGRKNLRM SKDQSAVLEE 60 CFKTHSALNP KQNTALANRL GLRPRQVENK RLEKEVAELR VLKAAPQAHN GASEGPLTTL 120 TMSLSRKRVA STSSASAGTV PSFSANAGTG MPMPSLKEWQ FFCAFRDTGA MYGGSSRLAK 180 VVKPAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365238 | 8e-61 | AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170043.1 | 3e-77 | homeobox-leucine zipper protein HOX2-like | ||||
Swissprot | A2Y931 | 3e-24 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 3e-24 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | M8A5B7 | 1e-132 | M8A5B7_TRIUA; Homeobox-leucine zipper protein HOX28 | ||||
STRING | TRIUR3_34646-P1 | 1e-133 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 4e-21 | homeobox protein 2 |
Publications ? help Back to Top | |||
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