PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34593-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 240aa MW: 26945.4 Da PI: 7.2197 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 192 | 225 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ TRIUR3_34593-P1 192 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 225 59*****************************885 PP | |||||||
2 | ELK | 33.6 | 8.8e-12 | 145 | 166 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ TRIUR3_34593-P1 145 ELKEMLLKKYSGCLSRLRSEFL 166 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.5E-17 | 1 | 43 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-20 | 1 | 39 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.5E-25 | 49 | 100 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.1E-23 | 53 | 99 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.6E-6 | 145 | 166 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 145 | 165 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.0E-8 | 145 | 166 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.519 | 165 | 228 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-20 | 167 | 234 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-14 | 167 | 232 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-27 | 170 | 230 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.26E-12 | 177 | 229 | No hit | No description |
Pfam | PF05920 | 3.6E-17 | 185 | 224 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 203 | 226 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKAQIAGHPR YPSLLSAYIE CRKVGAPPEV AALLEEIGQP ERRSGGAAAA GEIGLDPELD 60 EFMEAYCRLL SRYKEELSRP LDEAASFLTT IRSQLTNLCG GGATATSPHS GSLSTHSIKD 120 EPCSGDADGS DAGMQEHSSR LADHELKEML LKKYSGCLSR LRSEFLKKRK KGKLPKDARL 180 ALMDWWNTHY RWPYPTEEDK VRLAAMTGLD PKQINNWFIN QRKRHWKPSE DMRYDGGEHD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 169 | LRSEFLKKRK |
2 | 166 | 170 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB465042 | 1e-178 | AB465042.1 Triticum aestivum WLG4 mRNA for KN1-type homeobox transcription factor, complete cds. | |||
GenBank | AK248600 | 1e-178 | AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence. | |||
GenBank | AK363615 | 1e-178 | AK363615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178258.1 | 1e-154 | homeobox protein knotted-1-like 10 | ||||
Swissprot | Q9FP29 | 1e-115 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | M7ZE94 | 1e-177 | M7ZE94_TRIUA; Homeobox protein knotted-1-like 1 | ||||
STRING | TRIUR3_34593-P1 | 1e-178 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 3e-76 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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