PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34571-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 38386.4 Da PI: 6.611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90 | 4.2e-28 | 11 | 94 | 1 | 82 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+ TRIUR3_34571-P1 11 VPPGFRFHPTEEELLNYYLRKKVASEEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGV 94 69****************************.9***************952444443456*********************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-29 | 7 | 137 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.394 | 11 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-12 | 12 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEEIDL DVIRDVDLNK LEPWDIQEKC 60 KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGVIIINTC QPLSLDAAVR HAQVVSASTS 120 SDAGQEDGWV VCRVFKKKHH HKDAGAGNGK RGGGGRDDGG KAARSSSPLY SSDDALDQIL 180 HYMGRSCKQE HELSSPRPRT ATSRYLRPLE TVLGGHGFMK LPPLESPSAA ATARNSTTTP 240 LAPKGDGNVE REVAHAEDLH QPHRDGGITD WAMMDRLVAS HLNGQHDAST DQLCFDGTAG 300 HAGGNDALDD TAVNGLAFYS AAATRLLGGA AAGSSDDDLW SFARSAASSE RLSHVSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-23 | 8 | 138 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-23 | 8 | 138 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-23 | 8 | 138 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-23 | 8 | 138 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-23 | 8 | 138 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-23 | 8 | 138 | 14 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248449 | 0.0 | AK248449.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176e18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164672.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-81 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | M7Z1L1 | 0.0 | M7Z1L1_TRIUA; NAC domain-containing protein 43 | ||||
STRING | TRIUR3_34571-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-58 | NAC family protein |