PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34295-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 179aa    MW: 19109.7 Da    PI: 8.9599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34295-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.7e-1250100256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+G+r+++ +g+W+A Irdp ++    r+ l    tae Aa+a+++a+++++g+
  TRIUR3_34295-P1  50 QYRGIRQRP-WGKWAAGIRDPLKG---GRVCLAASPTAEAAARAYDRAARRIRGA 100
                      6********.**********8654...688888889****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-2350113IPR001471AP2/ERF domain
PROSITE profilePS5103219.55950107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2550108IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1650109IPR016177DNA-binding domain
PRINTSPR003671.2E-135162IPR001471AP2/ERF domain
PfamPF008471.3E-65199IPR001471AP2/ERF domain
PRINTSPR003671.2E-1389109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MCGGAIIYDY IPAHRRRVST ADFWPDADHS DAHSAAPDKA PRAKRGRTNQ YRGIRQRPWG  60
KWAAGIRDPL KGGRVCLAAS PTAEAAARAY DRAARRIRGA KAKVNFPNEI LVGAPAHEAP  120
CTMAAVLPSP KKEEEPAACS CEEVKALSEE LMAYESYMSF LGVPYMEGGA AAAAAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1750113569ATERF1
3gcc_A1e-1750113569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674171e-166AK367417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2056M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163333.12e-97ethylene-responsive transcription factor ERF071-like
TrEMBLT1NTX91e-125T1NTX9_TRIUA; Uncharacterized protein
STRINGTRIUR3_34295-P11e-126(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-21ERF family protein