PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34215-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 30201.8 Da PI: 9.6153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.9 | 2e-32 | 11 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekew.yfFskrdkkyatgkrknratksg 81 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd++ +v+a+ e+ ++++ ++a g+ r t+ g TRIUR3_34215-P1 11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQGefiheflhnassHVRAHG-ELnLLAMEKRMQSAAGSALARRTT-G 101 69****************************.9***************94478888776544333332.442344444444455666666544.5 PP NAM 82 yWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +at + + + ++ +g++ktLvfykgrap+g+k+dW+mheyrl TRIUR3_34215-P1 102 TCSATRTRSTPRGRaptapGSGRIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 153 55555554433333345558888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-33 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.765 | 11 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-18 | 12 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-33 | 194 | 206 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQGEF 60 IHEFLHNASS HVRAHGELNL LAMEKRMQSA AGSALARRTT GTCSATRTRS TPRGRAPTAP 120 GSGRIGMRKT LVFYKGRAPH GHKSDWIMHE YRLDDAVPAP TATNPAAAGD ASTYYSGTSS 180 SPIRGVAGDQ SSAQEDGWVI CRVFKKKNIV VNQGQNGGGG GAASNKLAGV APMERSQSNC 240 SSTLGRRQSK RRESETQETG ADLDVKGQII ELREDRVW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-26 | 11 | 208 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249120 | 5e-97 | AK249120.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177243.1 | 1e-103 | NAC domain-containing protein 43-like | ||||
TrEMBL | M7ZFU1 | 0.0 | M7ZFU1_TRIUA; NAC domain-containing protein 43 | ||||
STRING | TRIUR3_34215-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16506 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 1e-51 | NAC domain protein 66 |