PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34187-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 242aa    MW: 26189.3 Da    PI: 5.4538
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34187-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.6e-1452102148
                      TSSS-HHHHHHH.....HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdell.....vdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Ed +l     + +++++G++ W++Iar+++ gRt++++k++w++++
  TRIUR3_34187-P1  52 KGPWTENEDAQLeerliLSLHAEWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 102
                      5778877665541111178********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3347106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-1950105IPR009057Homeodomain-like
SMARTSM007173.0E-1151104IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-1351107IPR009057Homeodomain-like
PfamPF002494.6E-1252101IPR001005SANT/Myb domain
CDDcd001671.87E-1054102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALLTAEVQG NWPELKTKPA VKTRGGSSVH HRDRTAMCNN SGGRGGARAA RKGPWTENED  60
AQLEERLILS LHAEWGSRWS RIARKLPGRT DNEIKNYWRT HMRKKAQEEK MLAKKKAVAE  120
ASSSTTSLTT TTCSASATPT SSRAATTEAP QESGTSMDDE AEEEATTSVS EEKKAEVVQY  180
CSAVDIDQLW NDIAASESYP EMMMSWGSAG NVAVAAPVEP SSPVVVVVEV KVVVVVEVVE  240
AP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519041e-151JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156198.15e-87myb-related protein MYBAS2-like
SwissprotQ4JL762e-23MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLT1NTM61e-174T1NTM6_TRIUA; Uncharacterized protein
STRINGTRIUR3_34187-P11e-175(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.11e-24myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]