PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_34186-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 18802.2 Da PI: 6.5012 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.6 | 4.2e-38 | 17 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C ++Cvlapyfpa++p+++anvh++FGasnv +ll++lp eer +a++++++eA++r dPvyG++gvi++lq+++ ++ el TRIUR3_34186-P1 17 RCAACKYLRRRCGHGCVLAPYFPASRPRRYANVHRVFGASNVARLLQSLPVEERAQAAETMAMEAQWRGGDPVYGCAGVINRLQEEILATQCEL 110 6********************************************************************************************* PP DUF260 95 allkeel 101 a+++++l TRIUR3_34186-P1 111 ARTRAQL 117 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.952 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-38 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
EVQEEEEEGG GSGNPRRCAA CKYLRRRCGH GCVLAPYFPA SRPRRYANVH RVFGASNVAR 60 LLQSLPVEER AQAAETMAME AQWRGGDPVY GCAGVINRLQ EEILATQCEL ARTRAQLAIV 120 VAHGAQQAPP PSAPPPPAPS PLPAGGHRVA GMQRQGGQQD APLIDPDEFL DLDGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 11 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 11 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179652.1 | 3e-89 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 3e-40 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 3e-40 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | T1NTM5 | 1e-122 | T1NTM5_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_34186-P1 | 1e-123 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-35 | LOB domain-containing protein 24 |