PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34177-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 313aa    MW: 34988.9 Da    PI: 5.196
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34177-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-111066155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  TRIUR3_34177-P1 10 SRYHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 66
                     79*******************55558777778888.999999*************987 PP
2AP246.87.1e-15111164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++k +g+W A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  TRIUR3_34177-P1 111 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIQLRG 164
                      67*****999.9******99953323..36**********99************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-81066IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-111076IPR016177DNA-binding domain
CDDcd000189.16E-131078No hitNo description
SMARTSM003801.0E-111182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-91176IPR001471AP2/ERF domain
PROSITE profilePS5103215.7781176IPR001471AP2/ERF domain
CDDcd000181.04E-22111174No hitNo description
PfamPF008471.5E-10111164IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17111174IPR016177DNA-binding domain
SMARTSM003803.3E-27112178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-19112172IPR001471AP2/ERF domain
PROSITE profilePS5103218.36112172IPR001471AP2/ERF domain
PRINTSPR003674.3E-8113124IPR001471AP2/ERF domain
PRINTSPR003674.3E-8154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKCAAPRSS RYHGVTRLKW SGKYEAHLWD NTSQVEGRKR KGKHGSYVTE ENAARAHDLA  60
ALKYWGITQP TKLNFNISDY AKEIEIMKSM NQDEFVAYIR RQSSCFSRGT SSYRGVTRRK  120
DGKWQARIGR IGESRDTKDI YLGTFETEVE AAEAYDLAAI QLRGVHAVTN FDISNYSEEG  180
LKKLEGSSEV VNLEDQSEVT KLAVTNLDIS QHCEDGLKKL DGASQIVNLE DQSEVTKLSV  240
TNFDISNCCE DGLKKLEVSS EVANLEDQSE VTKLSVTNFD ISNCCEDGLK KLEGSSEVAN  300
LEDQSEVTKL AGQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865700.0DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150541.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE16e-66AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z024e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLM8B4Z20.0M8B4Z2_TRIUA; AP2-like ethylene-responsive transcription factor AIL1
STRINGTRIUR3_34177-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-68AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]