PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34020-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 347aa    MW: 37965.6 Da    PI: 6.5069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34020-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-49121421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhP+d+elv +yL++k++g        v + +vd++k+ePw+Lp ++  + kewyfFs++d+kyatg+r+nrat++gyWkatgkd+ +
  TRIUR3_34020-P1  12 LPPGFRFHPRDHELVLDYLCHKLSGGGgRGGGGVdMVDVDLNKCEPWELPDAACVGGKEWYFFSRHDRKYATGQRTNRATHTGYWKATGKDRVI 105
                      79**********************999533334569999***********7666789************************************* PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +     ++vg++ktLvfy grap+g+kt+Wvmhe+r+
  TRIUR3_34020-P1 106 TGDgAAAVVGMRKTLVFYLGRAPRGTKTEWVMHEFRV 142
                      *9755667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-563178IPR003441NAC domain
PROSITE profilePS5100553.42712178IPR003441NAC domain
PfamPF023651.2E-2513142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSMSMVEA RLPPGFRFHP RDHELVLDYL CHKLSGGGGR GGGGVDMVDV DLNKCEPWEL  60
PDAACVGGKE WYFFSRHDRK YATGQRTNRA THTGYWKATG KDRVITGDGA AAVVGMRKTL  120
VFYLGRAPRG TKTEWVMHEF RVEGRPPRSV HRQLATPHDG SPPFLLEEDW VLCRVFYKST  180
TAAPTPASDE SSGSLSSDLG VAPVLLPVAP INVVGRTQMA EITDGYYGQQ EHPTGILPVV  240
HHWPVASLPF TSFRDLLGDS QPNYVRFELG ADGEFCFPSA THFIATVENS TDVLNWGSKV  300
IDSLDGNADK EQENSIATTG LLLGPDHLHS KNFNGGSTIY SHAHSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-48718215172NAC domain-containing protein 19
3swm_B4e-48718215172NAC domain-containing protein 19
3swm_C4e-48718215172NAC domain-containing protein 19
3swm_D4e-48718215172NAC domain-containing protein 19
3swp_A4e-48718215172NAC domain-containing protein 19
3swp_B4e-48718215172NAC domain-containing protein 19
3swp_C4e-48718215172NAC domain-containing protein 19
3swp_D4e-48718215172NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3704951e-173AK370495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152869.11e-163NAC domain-containing protein 21/22-like
SwissprotQ84TE66e-69NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM7ZAN10.0M7ZAN1_TRIUA; NAC domain-containing protein 21/22
STRINGTRIUR3_34020-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-71NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]