PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33993-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 117aa MW: 13107.3 Da PI: 8.0531 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 145.3 | 1.4e-45 | 16 | 108 | 1 | 94 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+s imkk++ an+ki+kdaketv+ec+sefi f++s+as kcqrek ktin ddllwa+atlGf++y+eplkvyl++yre++ TRIUR3_33993-P1 16 VREQDRFLPIANISSIMKKAILANGKIAKDAKETVRECISEFI-FIASKASGKCQREKCKTINIDDLLWAMATLGFQEYIEPLKVYLQNYREVH 108 69****************************************9.************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-40 | 15 | 109 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.18E-27 | 19 | 108 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-18 | 22 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MSDAPASPPG GVFGGVREQD RFLPIANISS IMKKAILANG KIAKDAKETV RECISEFIFI 60 ASKASGKCQR EKCKTINIDD LLWAMATLGF QEYIEPLKVY LQNYREVHAH LAMWDLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 3e-37 | 17 | 106 | 3 | 93 | NF-YB |
4awl_B | 3e-37 | 17 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-37 | 17 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364176 | 1e-112 | AK364176.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G14. | |||
GenBank | BT009078 | 1e-112 | BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence. | |||
GenBank | KM078735 | 1e-112 | KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds. | |||
GenBank | KM078736 | 1e-112 | KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds. | |||
GenBank | KM078737 | 1e-112 | KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150941.1 | 8e-63 | nuclear transcription factor Y subunit B-like | ||||
Swissprot | P25209 | 2e-50 | NFYB_MAIZE; Nuclear transcription factor Y subunit B | ||||
TrEMBL | T1NT41 | 2e-82 | T1NT41_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_33993-P1 | 3e-83 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.3 | 2e-52 | nuclear factor Y, subunit B1 |
Publications ? help Back to Top | |||
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