PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33679-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 140aa MW: 15303.7 Da PI: 4.3043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 27.5 | 9e-09 | 4 | 40 | 1 | 37 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklF 37 +C++C+vlr++C++dC ++p++ p++q++++ F TRIUR3_33679-P1 4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATV-----F 40 6*********************55555544444443.....3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.3E-5 | 4 | 39 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LANHESSDSR HEDPGEPHYQ 60 QEASADTEAE AGSHVSQAEQ EQEQSTEPAA EHAEEVEKEE DEELALELTL GFAPVAARPA 120 GFHLSVRTAA EPAFVGLRFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251426 | 1e-114 | AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence. | |||
GenBank | AK361913 | 1e-114 | AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176408.1 | 2e-36 | LOB domain-containing protein 40-like | ||||
TrEMBL | M7YED1 | 8e-97 | M7YED1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_33679-P1 | 1e-97 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-24 | LOB domain-containing protein 41 |