PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33546-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 277aa MW: 29789.4 Da PI: 8.2256

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33546-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	51.1	2.3e-16	96	126	5	35
WRC 5 grCrRtDGKkWRCsrrvlegkklCErHlhrg 35 +rC RtDGKkWRC r++ +++k+C+rHl+r TRIUR3_33546-P1 96 RRCGRTDGKKWRCARDAEPDQKYCQRHLNRV 126 8***************************984 PP
2	QLQ	35.6	2.9e-13	7	38	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 FTa+Q+ +L +Q l+y ++aa+ P+P++L++ TRIUR3_33546-P1 7 LFTATQWVELQRQSLIYNHMAASSPIPSYLVF 38 6****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0031	6	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	14.368	7	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.8E-8	8	38	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	17.522	92	136	IPR014977	WRC domain
Pfam	PF08879	1.2E-13	96	125	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGAAGGLFTA TQWVELQRQS LIYNHMAASS PIPSYLVFSN INPAAAAAAA AAAPSQAAPS 60 YYCCYNTPLL IHHYQAQQAA QMSMLLQCMQ QAVARRRCGR TDGKKWRCAR DAEPDQKYCQ 120 RHLNRVGRAR PPPPARKQQH QHAAAAVVAH HRDRDKSAMT APAAIHTSHG NKSSGNTMLR 180 EDDDDYSRGL LDFTGGVCLP EQRENRLSLN YDNIAELYCN RQVTATPTAT ASAAASATAM 240 DDDAIHHGAA ATWVGIGGPL GEALGLAVEI QWPAGST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175582.1	1e-159	growth-regulating factor 6-like
TrEMBL	M8B1U0	0.0	M8B1U0_TRIUA; Uncharacterized protein
STRING	TRIUR3_33546-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	1e-14	growth-regulating factor 8