PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33519-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38108.8 Da PI: 7.0124 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.9 | 1.8e-11 | 31 | 67 | 8 | 45 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 Ed+ l++ ++++G ++W t+a+ ++ gR++ qc+ rw+ TRIUR3_33519-P1 31 EDKVLAQMINKHGLKNWQTVAHAIP-GRSAPQCRQRWR 67 9************************.***********8 PP | |||||||
2 | Myb_DNA-binding | 39.1 | 1.8e-12 | 76 | 118 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W+ ++++ gRt +k++w+ TRIUR3_33519-P1 76 KEAWSEQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGAIKEYWR 118 579*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.6E-6 | 23 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 31 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.68E-21 | 31 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-10 | 31 | 67 | No hit | No description |
Pfam | PF13921 | 6.0E-11 | 31 | 87 | No hit | No description |
PROSITE profile | PS50090 | 8.56 | 31 | 70 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 18.2 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-10 | 75 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.31E-10 | 78 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-16 | 80 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MSRIGDLMPR ERSVNSTSHS RKADGDSANV EDKVLAQMIN KHGLKNWQTV AHAIPGRSAP 60 QCRQRWRYKI DSAINKEAWS EQEELRLIRA HQIYGTKWRE MVKHFPGRTN GAIKEYWRGP 120 MKRKLNSYLS SGLLEQFPDI LENLSGTQNK SLDILKGTKV SDILNDTEGS SERNEMSSAV 180 PRISISEVGF TEVGENADVL GGESADFMYA RVASAKAPEN IIARSEQHAK TRRKLDLLSS 240 PVELKSSSYE VNSQRPLQQR EQMSPAVGGV SPSNGCHDVL PKILSECAKP VLSPTGSYQP 300 SDVHSAGTSD PCSLELDISD LMEMSYFDNL LIFPPGSPHD GNSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 31 | 127 | 14 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951905 | 0.0 | JF951905.1 Triticum aestivum clone TaMYB22 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172077.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172078.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172079.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172080.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172082.1 | 0.0 | transcriptional activator Myb-like | ||||
TrEMBL | M7Z4A1 | 0.0 | M7Z4A1_TRIUA; Myb-related protein 3R-1 | ||||
STRING | TRIUR3_33519-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 4e-38 | myb domain protein 3r-4 |