PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33494-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 434aa MW: 45872.9 Da PI: 9.2078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33494-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+dC++ F ++L+ H t H TRIUR3_33494-P1 194 PCSDCDEFFVKAESLELHRATrH 216 6******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	195	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.28E-15	218	429	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.7E-11	223	429	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDATAAGKKM GIGGEKKQQR KPGSSFWGAM ALKSRSQPGR AGESKNIKSE RKTTTTTTKR 60 SVSIGRSMTC PGSICGTKES AVLSRESCRN SHSGRNVSSS SRSLKAPDND ILSVPVVASG 120 AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSAL 180 DPRTSLVGGA GMLPCSDCDE FFVKAESLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL 240 VGKPRAAPIC RIERILKVYS SGRTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE 300 ILRFHCTTFT CSLGLAGATS LCRSSPQQCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKA 360 QTPLPGGGGG EKRAMLVCRV VAGRVKKLVN SSNSSEESGC DSVSSCSDLD ELSVFNPLAI 420 LPCFVVMYAV ATET

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDATAAGKKM GIGGEKKQQR KPGSSFWGAM ALKSRSQPGR AGESKNIKSE RKTTTTTTKR  60
SVSIGRSMTC PGSICGTKES AVLSRESCRN SHSGRNVSSS SRSLKAPDND ILSVPVVASG  120
AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSAL  180
DPRTSLVGGA GMLPCSDCDE FFVKAESLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL  240
VGKPRAAPIC RIERILKVYS SGRTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE  300
ILRFHCTTFT CSLGLAGATS LCRSSPQQCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKA  360
QTPLPGGGGG EKRAMLVCRV VAGRVKKLVN SSNSSEESGC DSVSSCSDLD ELSVFNPLAI  420
LPCFVVMYAV ATET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250862	0.0	AK250862.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100a05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154431.1	0.0	uncharacterized protein LOC109739792
TrEMBL	M7YMD0	0.0	M7YMD0_TRIUA; Uncharacterized protein
STRING	TRIUR3_33494-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-65	C2H2-like zinc finger protein