PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33469-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 636aa    MW: 69842.4 Da    PI: 7.0263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33469-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-20150196148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d+vk++G+  W+ Iar ++ gR +kqc++rw+++l
  TRIUR3_33469-P1 150 KGPWTQEEDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 196
                      79******************************.*************97 PP

2Myb_DNA-binding60.44e-19202245146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE++ l++a++++G++ W+ Ia+ ++ gRt++++k++w++
  TRIUR3_33469-P1 202 KDAWTAEEEQALINAHREYGNK-WAEIAKVLP-GRTDNSIKNHWNS 245
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-11109154IPR009057Homeodomain-like
SuperFamilySSF466896.5E-6113154IPR009057Homeodomain-like
PROSITE profilePS500905.506119144IPR017877Myb-like domain
PROSITE profilePS5129431.783145200IPR017930Myb domain
SuperFamilySSF466891.65E-32147243IPR009057Homeodomain-like
SMARTSM007178.5E-19149198IPR001005SANT/Myb domain
CDDcd001671.04E-16152196No hitNo description
PfamPF139211.7E-18153213No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27155203IPR009057Homeodomain-like
SMARTSM007171.3E-18201249IPR001005SANT/Myb domain
PROSITE profilePS5129424.45201251IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-25204251IPR009057Homeodomain-like
CDDcd001673.65E-15204247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAEEAEHEGC VENRQPLAAS SESVSEGSSY GGAGAPARMS PPVSGSVNSV SGLRSTQFAK  60
DACFECGVSL TMVVEPCNIC YLDGKILLGI PYISTRIFRI LASLRFQANK WAYKESEGWL  120
DITRAEFFPD RTEVQCLHRW QKVLNPELIK GPWTQEEDDK IIDLVKKYGP TKWSVIARSL  180
PGRIGKQCRE RWHNHLNPDI RKDAWTAEEE QALINAHREY GNKWAEIAKV LPGRTDNSIK  240
NHWNSSLRKK LDVYGTRNIL AIPRLVGHDD FKDKQKSLAS EGHLDLNTVP GITSKNLPEI  300
AHHSNFSSHL QSYKLDHAKD RSGFLSISFL PTVQPLTSYE VSSVVNGSAV TSAAQGLESD  360
SVRDKGLEII SVHEKGLKVD STLDTLGEPD STQLEAVPAK GEESSLKNDA QSSLGPLCYQ  420
IPNMNDVAPA SSSLISEHQT VHQTSEHCRN GALSPNGCTT PTKGTMSVQL SVDSILKIAA  480
DSFPVTPSIL RRRKRERLTP ASDLKFSEPN TDSFYTPAGK RPATDTPESF RTASFLSLGS  540
LDGLSSSARG FDVSPPYRIR AKRMCLTKSV EKQLDFSSNG LGTCGSEVLN SPHQNSQSTH  600
SLSEASIMKE KELNGHVTQL ETSTKNIAYT TNMDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-6512525133159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-6512525133159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2364940.0HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192352.10.0myb-related protein B-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLM7ZX380.0M7ZX38_TRIUA; Myb-related protein 3R-1
STRINGTRIUR3_33469-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-81myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]