PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33469-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 636aa MW: 69842.4 Da PI: 7.0263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.5 | 4.2e-20 | 150 | 196 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+vk++G+ W+ Iar ++ gR +kqc++rw+++l TRIUR3_33469-P1 150 KGPWTQEEDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 196 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 60.4 | 4e-19 | 202 | 245 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE++ l++a++++G++ W+ Ia+ ++ gRt++++k++w++ TRIUR3_33469-P1 202 KDAWTAEEEQALINAHREYGNK-WAEIAKVLP-GRTDNSIKNHWNS 245 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 109 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.5E-6 | 113 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.506 | 119 | 144 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 31.783 | 145 | 200 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-32 | 147 | 243 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-19 | 149 | 198 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-16 | 152 | 196 | No hit | No description |
Pfam | PF13921 | 1.7E-18 | 153 | 213 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 155 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-18 | 201 | 249 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.45 | 201 | 251 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 204 | 251 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-15 | 204 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MAEEAEHEGC VENRQPLAAS SESVSEGSSY GGAGAPARMS PPVSGSVNSV SGLRSTQFAK 60 DACFECGVSL TMVVEPCNIC YLDGKILLGI PYISTRIFRI LASLRFQANK WAYKESEGWL 120 DITRAEFFPD RTEVQCLHRW QKVLNPELIK GPWTQEEDDK IIDLVKKYGP TKWSVIARSL 180 PGRIGKQCRE RWHNHLNPDI RKDAWTAEEE QALINAHREY GNKWAEIAKV LPGRTDNSIK 240 NHWNSSLRKK LDVYGTRNIL AIPRLVGHDD FKDKQKSLAS EGHLDLNTVP GITSKNLPEI 300 AHHSNFSSHL QSYKLDHAKD RSGFLSISFL PTVQPLTSYE VSSVVNGSAV TSAAQGLESD 360 SVRDKGLEII SVHEKGLKVD STLDTLGEPD STQLEAVPAK GEESSLKNDA QSSLGPLCYQ 420 IPNMNDVAPA SSSLISEHQT VHQTSEHCRN GALSPNGCTT PTKGTMSVQL SVDSILKIAA 480 DSFPVTPSIL RRRKRERLTP ASDLKFSEPN TDSFYTPAGK RPATDTPESF RTASFLSLGS 540 LDGLSSSARG FDVSPPYRIR AKRMCLTKSV EKQLDFSSNG LGTCGSEVLN SPHQNSQSTH 600 SLSEASIMKE KELNGHVTQL ETSTKNIAYT TNMDVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-65 | 125 | 251 | 33 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-65 | 125 | 251 | 33 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ236494 | 0.0 | HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192352.1 | 0.0 | myb-related protein B-like | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | M7ZX38 | 0.0 | M7ZX38_TRIUA; Myb-related protein 3R-1 | ||||
STRING | TRIUR3_33469-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-81 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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