PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33462-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 554aa    MW: 64436.5 Da    PI: 8.8899
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33462-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.3e-219100190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      kfY++YA++ GF vr+ ++kk  +n+ + +++f+Cs+eg+++++ k+     ++rr+++ tr+gC+a++ v++  ++++++++  ++H H l+
  TRIUR3_33462-P1   9 KFYKAYAHQSGFGVRIGQQKKI-ENKVVRTKRFMCSREGFKSKDIKEindPLRKRRKQTDTRCGCDAHIFVRLCGENTYKIDSWIEHHVHGLV 100
                      6*****************9998.8888*****************999887788999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-199100IPR004330FAR1 DNA binding domain
PfamPF105511.1E-31221314IPR018289MULE transposase domain
PROSITE profilePS509669.582506538IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-4513540IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
FEGLEAVEKF YKAYAHQSGF GVRIGQQKKI ENKVVRTKRF MCSREGFKSK DIKEINDPLR  60
KRRKQTDTRC GCDAHIFVRL CGENTYKIDS WIEHHVHGLV SPDKRHLIRS NRRVSERAKN  120
TLYTCHKASI GTSQAYRLLQ VSEGGIPNAG CTKRDLQNYY RGLRYKIRDA DAQMFVAQLA  180
RKQEVNSAFF YDFEVNDEGN LVRVFWADAT SRKNYSHFGD VISFDSTYTT NQYNMIFAPF  240
TGVNHHLQSV FFGAGFLSNE KDESYIWLFQ TFLKAMGGVA PRLIITDEAA SIKNGIDKVL  300
PATMHRLCMW HIMEKVPEKV GPLIREDSEF WPRLNSCVWG SETASEFESQ WNSIITDFGL  360
EDNEWLAKRF TIRDTWIPAY FMDISLAGLL RTTSRSESAN SFFNRFIHRR LAFVEFWLRF  420
DTALECQREE ELMADNRSMH TTPQLFTPWT MEKQGSEVFT YEVFEKFQLQ VIAARDHCCV  480
QGITQGVGLK TVTLRGRSGK VREVSYDTTT MIANCPCKLF ESIGIPCRHI IQVLRIENQN  540
ELPNYYIMKR WQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198857.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1NRN60.0T1NRN6_TRIUA; Uncharacterized protein
STRINGTRIUR3_33462-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5