PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33405-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 173aa MW: 18651.3 Da PI: 5.0201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.5e-19 | 70 | 116 | 39 | 85 |
EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +d +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++ TRIUR3_33405-P1 70 RDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 116 6889****************************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0019 | 49 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 70 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.17E-16 | 70 | 116 | No hit | No description |
SuperFamily | SSF101936 | 1.83E-17 | 70 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-20 | 70 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.632 | 70 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MASGKATNHG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW 60 GAQIYEKHSR DGDGKVWRFR YSYWNSSQSY VLTKGWSRFV KETGLRAGDT VAFYRSAYGN 120 DTEDQLFIDY KKMNKNDDAA DAAISNENET GHVAVKLFGV DIAGGGMAGS SGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-23 | 71 | 137 | 58 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-163 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191027.1 | 1e-57 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
Swissprot | Q9AWS7 | 3e-35 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | T1NRI2 | 1e-124 | T1NRI2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_33405-P1 | 1e-125 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37111 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-26 | related to ABI3/VP1 2 |