PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33333-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 416aa    MW: 44880.4 Da    PI: 9.7154
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33333-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.81e-19103247371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.......................................................... 37 
                      +++Lr++++k   ++ek+e  g++t+nev  +L  +                                                          
  TRIUR3_33333-P1 103 NRGLRQFSMK---VCEKVEGkGRTTYNEVHCSL--Dfrvqllyhlpsatnasrstsskqwhfgnvflqrhmpspssnqttssqlrlaitpnqgl 191
                      689*******...*****999************..667******************************************************** PP

          E2F_TDP  38 .......................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                             d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  TRIUR3_33333-P1 192 kdngtytnecidypkreyleqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 247
                      ***********************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-1098129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-21101247IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-20104247IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.86E-12205248IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-22206253IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.48E-41252355IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.63E-41254364No hitNo description
SMARTSM011382.0E-75254414IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-40255384IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVSSARSSGG MAHSASNSAG SAGSPSGGIG PGKGVAAGGA ATPAAAPTPG TTSASASTPA  60
SGSTVARRLN DLEIQGDDPP SSQPAASKKK KKGTRVVGPD KGNRGLRQFS MKVCEKVEGK  120
GRTTYNEVHC SLDFRVQLLY HLPSATNASR STSSKQWHFG NVFLQRHMPS PSSNQTTSSQ  180
LRLAITPNQG LKDNGTYTNE CIDYPKREYL EQQYDEKNIR RRVYDALNVL MAMDIISKDK  240
KEIQWKGLPR TSLSDIDKLK TEVIGLKGRI DKKSAYLQEL QDQYVGLQNL VERNEQLYGS  300
GDAPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDSF VLKAMGFSGK  360
EETDGTVALV ANAVECSSAS NVYGRRSPQP ARPNGIRLRT SPPIPGILKG RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-132112525293PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.11e-155transcription factor-like protein DPB
SwissprotQ9FNY29e-91DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM7YL520.0M7YL52_TRIUA; Transcription factor-like protein DPB
STRINGTRIUR3_33333-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.29e-88Transcription factor DP