PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33098-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 32392.8 Da PI: 8.0516 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 6.9e-39 | 17 | 75 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e++++cprC+s ntkfCyynnys+sqPryfCkaCrryWt+GG+lrnvP+Ggg+rk k+ TRIUR3_33098-P1 17 PEQKVECPRCKSGNTKFCYYNNYSMSQPRYFCKACRRYWTHGGSLRNVPIGGGCRKPKR 75 7899****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 15 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.649 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGEVTSAAE KKPRPKPEQK VECPRCKSGN TKFCYYNNYS MSQPRYFCKA CRRYWTHGGS 60 LRNVPIGGGC RKPKRPGTSE AHKLGVASSS EPTAVVPPST CTGMNFANVL PTFMSAGFEI 120 PSSLSLTAFG SSSSSNTAAV MSPGGTTSFL DVLRGGTGGL LDGSLSQNNG YYYGGPATGS 180 GIGMLMTPPV ASFGIPGPMQ QHGDLVVGGN GIGAATASIF QGGTGEEGDD GTGGVMGLQW 240 QPQVGNGGGA GVVSGGVHHL ETGNNVTMGN NNIHNNNNNN SGGDDNNGAS SRDYYWINNG 300 GSNPWQSLLN SSSLM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ544771 | 0.0 | KJ544771.1 Aegilops tauschii cultivar AS90 prolamin binding factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190796.1 | 0.0 | dof zinc finger protein DOF3.2-like | ||||
TrEMBL | M7ZQ36 | 0.0 | M7ZQ36_TRIUA; Dof zinc finger protein PBF | ||||
STRING | TRIUR3_33098-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 5e-33 | TARGET OF MONOPTEROS 6 |