PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_33045-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 956aa MW: 106945 Da PI: 6.612 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.3e-22 | 92 | 193 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++ TRIUR3_33045-P1 92 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RD 181 99*****************************96555544..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ TRIUR3_33045-P1 182 EKSQLLLGIRRA 193 677789999997 PP | |||||||
2 | Auxin_resp | 123.1 | 2e-40 | 218 | 300 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ TRIUR3_33045-P1 218 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 300 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-43 | 82 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-40 | 84 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-18 | 91 | 192 | No hit | No description |
PROSITE profile | PS50863 | 11.871 | 92 | 194 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-21 | 92 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-20 | 92 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-35 | 218 | 300 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.409 | 888 | 956 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 956 aa Download sequence Send to blast |
MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA 60 QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP 120 LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR 180 DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE 240 FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ 300 VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDEG EVDSAFKRAM 360 PWLGDDFALK DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGTGT 420 GNDDLMRRFN MQSQNISLPN SQVGSKMDHA AMAQHQQQSH QLQQQQQQQQ EHLQRQQSLP 480 QQQQEHLQRQ QSQPQQQLKT AASMPSMEQH KLREQQPQGG QAVSQAQMLS QIFQPSSSQL 540 QQLGLPKSPT QRPGFPGLPT ASSLQQPALG QAPQVQQAAE YQQALLQSQQ QQLQQLSQPE 600 MQLQLLQKIQ QQNMLSQLNP QHQSQLMQQL SQKNQEYLQQ QILQHQLSGS DAMVQFKQSH 660 QTPSNNITGS LTPQQLARSH SALAESEDPS SSTAPSANRL SPMNSLSRTH QGSRNLTDMT 720 TSPHIDNLLQ EIQSKPDNRN KNDLQSSKET IPVPNRYPVS DQLDASSATS FCLDESPREG 780 FSFPPVCLDS NAQVDPRDNF LIAENVDSLM PDALLSRGMG SGKDICNLPS GQRDHREVDN 840 ELSSAAFSSQ SFGVPDISFK PGCSGDIAVN DGGMPSQGLW NNQTQRMRTF TKVQKRGSVG 900 RSIDITRYTN YDELRHDLAC MFGIQGQLED PYRMDWKLVY VDHENDILLV GDDPWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-151 | 1 | 321 | 66 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374262 | 0.0 | AK374262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058N24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305688.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Refseq | XP_025812098.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | M7YTG8 | 0.0 | M7YTG8_TRIUA; Auxin response factor | ||||
STRING | TRIUR3_33045-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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