PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32904-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 586aa MW: 64456.8 Da PI: 8.4677

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32904-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	274	328	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt eLHerFveav++L G++kAtPk +l+lmkv+gLt++hvkSHLQkYR TRIUR3_32904-P1 274 KSRLRWTLELHERFVEAVNKLEGPDKATPKGVLKLMKVEGLTIYHVKSHLQKYRH 328 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.098	271	331	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-30	272	329	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-16	273	328	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-24	274	328	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	276	327	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-22	363	407	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MSSHGVVAVK PIAAPDKTTH SYACGSTQSS VHKLLDSKLD HLGLLDDNLS STSQSSGIKT 60 ELIRTSSLGR SSLPFNLQRR SPEPDPESPL SHVSHPNFSE PMASNSSTFC TSLFSSSSTN 120 SAPCRRMGAL PFLPHPPKYE QQVLPGQSST SSLQLSGDTG NVHDEAEQAD DIKDFLNLSA 180 GDASDGSFHG ENQAFAFAEA EQMEFQFLSE QLGIAITDNE ESPQLDDIYD TPPPQMSSLP 240 VSSCSNQSLQ NPGSPAKLPL SSSRSSSGSA AANKSRLRWT LELHERFVEA VNKLEGPDKA 300 TPKGVLKLMK VEGLTIYHVK SHLQKYRHAK YIPEIKEEKK ASSDLKKVQP GSSGSDPFKN 360 KNLAEALRMQ MEVQKQLHEQ LEVQRQLQLR IEEHAKYLQR ILEEQQKFVL DRSGDISGKV 420 LSPALIAALW NVWERRIRSL ACGLAPAGLK RRGALVAGGL ERRTFEDWEE LKQGLVHGLW 480 TGACRSEKAR RTGCWRLGAG RVGGQGGAEA GAGPRYISDK FNKWSGVDKR MWNLFKMLRT 540 NDWLKLKSSR LYIFSLVIQD HIESLGKPIL LKGDEVLPNG LLAQSA

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MSSHGVVAVK PIAAPDKTTH SYACGSTQSS VHKLLDSKLD HLGLLDDNLS STSQSSGIKT  60
ELIRTSSLGR SSLPFNLQRR SPEPDPESPL SHVSHPNFSE PMASNSSTFC TSLFSSSSTN  120
SAPCRRMGAL PFLPHPPKYE QQVLPGQSST SSLQLSGDTG NVHDEAEQAD DIKDFLNLSA  180
GDASDGSFHG ENQAFAFAEA EQMEFQFLSE QLGIAITDNE ESPQLDDIYD TPPPQMSSLP  240
VSSCSNQSLQ NPGSPAKLPL SSSRSSSGSA AANKSRLRWT LELHERFVEA VNKLEGPDKA  300
TPKGVLKLMK VEGLTIYHVK SHLQKYRHAK YIPEIKEEKK ASSDLKKVQP GSSGSDPFKN  360
KNLAEALRMQ MEVQKQLHEQ LEVQRQLQLR IEEHAKYLQR ILEEQQKFVL DRSGDISGKV  420
LSPALIAALW NVWERRIRSL ACGLAPAGLK RRGALVAGGL ERRTFEDWEE LKQGLVHGLW  480
TGACRSEKAR RTGCWRLGAG RVGGQGGAEA GAGPRYISDK FNKWSGVDKR MWNLFKMLRT  540
NDWLKLKSSR LYIFSLVIQD HIESLGKPIL LKGDEVLPNG LLAQSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	274	331	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	274	331	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	274	331	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	274	331	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951946	0.0	JF951946.1 Triticum aestivum clone TaMYB63 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163203.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020163204.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-140	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	M7ZM53	0.0	M7ZM53_TRIUA; Myb family transcription factor APL
STRING	TRIUR3_32904-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	4e-54	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]