PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32855-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 517aa MW: 55518.3 Da PI: 6.9817

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32855-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	140	200	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss TRIUR3_32855-P1 140 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 200 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	137	197	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-31	142	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MELAGAAHPQ PPESDVAPPR TPPQAPAEIL VRLFKLAASY KVEHRYRDDV CQLIIARFAY 60 HTVHGQDSCK DTGDTRITEE NSCTPPDLNL SQPNNSGLNS SSACENQTSN GDEMTEPEST 120 LEAAKTEGDG SNKEKVLKKP DKILPCPRCN SMDTKFCYYN NYNIHQPRHF CRGCQRYWTA 180 GGSMRNLPVG AGRRKSKSSS TNCNGILIPG GSLSAPGGDA SVIPLPIKEN QPAVKFGSDS 240 TLPNSMASLL RVEEQNKNSN PASTAHPRNG ENQTCPPSAT TSDNPRIESV KVAVGVHQNG 300 ITGDCNGVTP MPPIPCFPGA PFMYPWNPAW NGVPAMAAPV CPVPAEPANC SENGHGGNIQ 360 WNFPPMVPMP GFCGPPIPFP VMPPSIWPLV SPWPNGAWSA PWLGPAYNMS AAPPTSSSTC 420 SDSGSPVLGK HPRDSEPRGG EKAERSLWIP KTLRIDDPDE AAKSSIWTTL GIEPGERGMF 480 RAFQPKSGGR EQMSNAARVM QANPAAQSRF ASFQETT

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MELAGAAHPQ PPESDVAPPR TPPQAPAEIL VRLFKLAASY KVEHRYRDDV CQLIIARFAY  60
HTVHGQDSCK DTGDTRITEE NSCTPPDLNL SQPNNSGLNS SSACENQTSN GDEMTEPEST  120
LEAAKTEGDG SNKEKVLKKP DKILPCPRCN SMDTKFCYYN NYNIHQPRHF CRGCQRYWTA  180
GGSMRNLPVG AGRRKSKSSS TNCNGILIPG GSLSAPGGDA SVIPLPIKEN QPAVKFGSDS  240
TLPNSMASLL RVEEQNKNSN PASTAHPRNG ENQTCPPSAT TSDNPRIESV KVAVGVHQNG  300
ITGDCNGVTP MPPIPCFPGA PFMYPWNPAW NGVPAMAAPV CPVPAEPANC SENGHGGNIQ  360
WNFPPMVPMP GFCGPPIPFP VMPPSIWPLV SPWPNGAWSA PWLGPAYNMS AAPPTSSSTC  420
SDSGSPVLGK HPRDSEPRGG EKAERSLWIP KTLRIDDPDE AAKSSIWTTL GIEPGERGMF  480
RAFQPKSGGR EQMSNAARVM QANPAAQSRF ASFQETT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182001.1	0.0	cyclic dof factor 2-like isoform X2
TrEMBL	M7ZFZ8	0.0	M7ZFZ8_TRIUA; Dof zinc finger protein DOF5.2
STRING	TRIUR3_32855-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-69	cycling DOF factor 2