PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32773-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GeBP

Protein Properties

Length: 345aa MW: 37876.4 Da PI: 5.1919

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32773-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.9	7.1e-34	64	163	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+q +fe+ TRIUR3_32773-P1 64 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHEQAVFEI 157 79***********************9977778***********************************8889************* PP DUF573 92 skkiWg 97 ++ iW+ TRIUR3_32773-P1 158 ARNIWR 163 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-30	65	162	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVDDPSAAGA AASSSFPDAD AYGNGDSEDI EFPVDPIPNP PFSSSAPVAA PASATATVGE 60 RRPLFQRLWT EEDEIVILRA FAEFTAQRGT AFASHQYDTE PFYEEMRRRL QLDFSKSQLA 120 EKLRRLKRKY RNCVERLRCS GNTFSFRSPH EQAVFEIARN IWRPSSDKHG RDPNAADSED 180 DATITATNAA ANGDAKSPSS SKAHRRGRRR RTADLAADAS EGPQPYISGP MPVKTEDSLP 240 AFFPQVSMDG AEPVVAPVVN TESSVLTPLF KEMVRAMLGI GGCPSPLGLG AKVREQPSAV 300 LGIPMEGEKW RQQRILELEV YLRRIDLLQD EVKSALEELK STPPT

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVDDPSAAGA AASSSFPDAD AYGNGDSEDI EFPVDPIPNP PFSSSAPVAA PASATATVGE  60
RRPLFQRLWT EEDEIVILRA FAEFTAQRGT AFASHQYDTE PFYEEMRRRL QLDFSKSQLA  120
EKLRRLKRKY RNCVERLRCS GNTFSFRSPH EQAVFEIARN IWRPSSDKHG RDPNAADSED  180
DATITATNAA ANGDAKSPSS SKAHRRGRRR RTADLAADAS EGPQPYISGP MPVKTEDSLP  240
AFFPQVSMDG AEPVVAPVVN TESSVLTPLF KEMVRAMLGI GGCPSPLGLG AKVREQPSAV  300
LGIPMEGEKW RQQRILELEV YLRRIDLLQD EVKSALEELK STPPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250922	0.0	AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169680.1	0.0	probable transcription factor At3g04930
Refseq	XP_020169681.1	0.0	probable transcription factor At3g04930
TrEMBL	M7YGN8	0.0	M7YGN8_TRIUA; Uncharacterized protein
STRING	TRIUR3_32773-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-44	DNA-binding storekeeper protein-related transcriptional regulator