PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32613-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 722aa    MW: 80096.8 Da    PI: 4.6159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32613-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.8e-5291421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  ++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  TRIUR3_32613-P1   9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699***********************988889***************96336677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  TRIUR3_32613-P1 103 KSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **976555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-583163IPR003441NAC domain
PROSITE profilePS5100556.9929163IPR003441NAC domain
PfamPF023651.3E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN  240
SGIDEANVLG MPSHGNVDES PKVSRTVYLY IMHYLSVQSL KADMSVGSLA HLIDSQTENL  300
GSHEFATVSA PMLSHEDLDK LLLQLPHNSV EDFLNETIAD PDEHSSTAYK VQYDADTCFM  360
QAQGELLYDG PNWFGNFLSD DTNPQQSGLY ENAALLPYGT NPDVLSMDSG DESLQDLFNS  420
MDDSSGQNDV WSNGFGFNPM HQQLQSTVHP NYIFSQQGIA PRRLRLLRLL DSSSDVNVES  480
RECMTRDEHE GEESDIVTSK CTSESVESSA DVDDSESTGV TIMTRRRALT RSVPSDCDDA  540
QSTGITIMAR RPAPSSNMPS DEADAEATGI DIMSRHTAPS SSTDSSFNTE QGTAVRRLRL  600
QSNLDAGSCS SVDGSSSCII EHGSENEGLE AEIEEHVDTN FPDDAGNSHA DEQMYMPDHE  660
ANSGMRLRKT AEKSDKESKQ ECGLQSHVRA PRKRGGFAAR MILPVLSVAL LVLVSVGIYG  720
WA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-47816419169NAC domain-containing protein 19
3swm_B3e-47816419169NAC domain-containing protein 19
3swm_C3e-47816419169NAC domain-containing protein 19
3swm_D3e-47816419169NAC domain-containing protein 19
3swp_A3e-47816419169NAC domain-containing protein 19
3swp_B3e-47816419169NAC domain-containing protein 19
3swp_C3e-47816419169NAC domain-containing protein 19
3swp_D3e-47816419169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659390.0AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181255.10.0protein NTM1-like 9 isoform X1
TrEMBLM7Z8M50.0M7Z8M5_TRIUA; NAC domain-containing protein 78
STRINGTRIUR3_32613-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-70NAC 014