PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_32331-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17302.1 Da PI: 4.732 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8e-19 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr +k +g+Wv+eIr+p gk++r++lg+f ++e+Aa a++ a+++l+g+ TRIUR3_32331-P1 14 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRGH 64 69****999.**********8...557**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-35 | 14 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 14 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-12 | 14 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 14 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 14 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-29 | 14 | 71 | No hit | No description |
PRINTS | PR00367 | 3.1E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 53 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
VVPDNAAGVA AAEQYRGVRK RKWGKWVSEI REPGKKTRIW LGSFESPEMA AVAHDVAALR 60 LRGHEARLNF PGLAHLFRRP DTPEAHDXSG GGGFPDRLDD VAWNALLRSD DLEPESPNMW 120 AELAEAMLLA PPVWEGSAVD NDEWSQGSLW DPSCWS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 10 | 71 | 1 | 63 | ATERF1 |
3gcc_A | 1e-17 | 10 | 71 | 1 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC119671 | 7e-64 | AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence. | |||
GenBank | AC135460 | 7e-64 | AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence. | |||
GenBank | AP014967 | 7e-64 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 7e-64 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194566.1 | 6e-95 | ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | T1NNK4 | 1e-107 | T1NNK4_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_32331-P1 | 1e-108 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71450.1 | 6e-33 | ERF family protein |