PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32331-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 156aa    MW: 17302.1 Da    PI: 4.732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32331-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-191464256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g+
  TRIUR3_32331-P1 14 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRGH 64
                     69****999.**********8...557**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-351477IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-221471IPR016177DNA-binding domain
PfamPF008471.5E-121464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-311471IPR001471AP2/ERF domain
PROSITE profilePS5103223.1171471IPR001471AP2/ERF domain
CDDcd000183.04E-291471No hitNo description
PRINTSPR003673.1E-121526IPR001471AP2/ERF domain
PRINTSPR003673.1E-125373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
VVPDNAAGVA AAEQYRGVRK RKWGKWVSEI REPGKKTRIW LGSFESPEMA AVAHDVAALR  60
LRGHEARLNF PGLAHLFRRP DTPEAHDXSG GGGFPDRLDD VAWNALLRSD DLEPESPNMW  120
AELAEAMLLA PPVWEGSAVD NDEWSQGSLW DPSCWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171071163ATERF1
3gcc_A1e-171071163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196717e-64AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354607e-64AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAP0149677e-64AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126197e-64CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194566.16e-95ethylene-responsive transcription factor ERF022-like
TrEMBLT1NNK41e-107T1NNK4_TRIUA; Uncharacterized protein
STRINGTRIUR3_32331-P11e-108(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-33ERF family protein