PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_32168-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 14911.7 Da PI: 6.1068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 1 | 50 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g TRIUR3_32168-P1 1 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 50 59****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.76E-29 | 1 | 58 | No hit | No description |
PROSITE profile | PS51032 | 23.512 | 1 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-37 | 1 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 2 | 13 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 2 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 2 | 59 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-10 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
QYRGVRKRKW GKWVSEIRQP GTKTRIWLGS FESAEMAAVA HDVAALRLRG RDAQLNFPGS 60 VDRLPRPASS HPAECPGWEL VGGRGSDEEF EVDSPRLWAE MAEAMLLEPP AWATGASEMD 120 QAAHCWSHGS LWDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 1 | 62 | 5 | 67 | ATERF1 |
3gcc_A | 2e-17 | 1 | 62 | 5 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096569 | 2e-88 | FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 7e-86 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 3e-31 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | T1NN47 | 3e-92 | T1NN47_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_32168-P1 | 5e-93 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-25 | ERF family protein |