PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32168-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 134aa    MW: 14911.7 Da    PI: 6.1068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32168-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-18150255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  TRIUR3_32168-P1  1 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 50
                     59****999.**********8...325*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-31158IPR001471AP2/ERF domain
CDDcd000182.76E-29158No hitNo description
PROSITE profilePS5103223.512158IPR001471AP2/ERF domain
SMARTSM003805.8E-37164IPR001471AP2/ERF domain
PRINTSPR003673.9E-10213IPR001471AP2/ERF domain
PfamPF008472.2E-11250IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22259IPR016177DNA-binding domain
PRINTSPR003673.9E-102440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
QYRGVRKRKW GKWVSEIRQP GTKTRIWLGS FESAEMAAVA HDVAALRLRG RDAQLNFPGS  60
VDRLPRPASS HPAECPGWEL VGGRGSDEEF EVDSPRLWAE MAEAMLLEPP AWATGASEMD  120
QAAHCWSHGS LWDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17162567ATERF1
3gcc_A2e-17162567ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965692e-88FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194473.17e-86ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I23e-31ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLT1NN473e-92T1NN47_TRIUA; Uncharacterized protein
STRINGTRIUR3_32168-P15e-93(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-25ERF family protein