PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32095-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 250aa    MW: 27382.5 Da    PI: 10.7511
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32095-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.5e-17158195136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg ++  Tp++Rrgpdg++tLCnaCGl ++ kg++
  TRIUR3_32095-P1 158 CQHCGISSnnTPMMRRGPDGPRTLCNACGLAWANKGMM 195
                      *****99889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.5E-1788130IPR010402CCT domain
PROSITE profilePS5101713.53388130IPR010402CCT domain
SMARTSM004015.3E-12152205IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11156199No hitNo description
CDDcd002021.10E-12157196No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15157198IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-14158193IPR000679Zinc finger, GATA-type
PROSITE patternPS003440158185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASIAAGRLL LIGIRRYFYE FLGFKMFAPL RQKLSGGIEF CYAGGRKFRH PHEFKCASGS  60
LIAWRKGARP GYGRGAVVFS IIQLNSHRMA SLMRFREKRK ERNFDKKIRY SVRKEVAHRM  120
QRHKGQFTSS KAKAEEAAAA ANSDWGAVEG RPLSAPVCQH CGISSNNTPM MRRGPDGPRT  180
LCNACGLAWA NKGMMREVKG HTPLKVVPPA TDDAQNGVAE APTAEQQHLA LEAAPEAPVA  240
PAPAANGHDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588960.0AK358896.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166796.11e-119GATA transcription factor 17-like isoform X1
SwissprotQ6Z4339e-72GAT17_ORYSJ; GATA transcription factor 17
TrEMBLM7ZYC80.0M7ZYC8_TRIUA; GATA transcription factor 24
STRINGTRIUR3_32095-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-46ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]