PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32041-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 656aa    MW: 70541.9 Da    PI: 8.3355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32041-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07154174526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++far G+Ck G+ C+F Hg
  TRIUR3_32041-P1 154 PCQYFAR-GFCKNGSGCRFLHG 174
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.065149176IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4151175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5152174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6153177IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4154174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3305.0E-6311379IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.34E-8311383IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MGSPGKQQQI KSRKRNCAPT LPPRLPSSVI QSFHIPRSSL PPPIDADLAS KIMGMLLTQD  60
KSEEDMIRLA FGPEHLLQSV VADLAACSKP PSPPAPAWRM APGAAGGDAE GGLPFGAASE  120
AFYPEEEYGC WSPASGTHHR RSFSLSDAEG GWKPCQYFAR GFCKNGSGCR FLHGLPEDVA  180
EQEMAVMRAK ALAAARSQMM APAFPFSPSP PKGLSFLLQQ QSESQRWHLL NPHKLPFSLV  240
IQPSRLLILA ASGRRTCCSP EAMTCTGSPT GRLAWTAATS PSTTARARST SPSPPTPPSP  300
KRTCQATSVR SMYGPVQDVR IPHQPKRMFG FVSFVYPETV RLVLAKGNPH FVCDARVLVK  360
PYKEKGKVPD RFRHGGGGGH CLSPHHREFA SVGSAMPPAG LLDSRDPFDL QQPQIGEHLN  420
TPIYSLIISY LRKAFDEMVL PLPGQRMLYG SMAGHEAAFL RRRLEEQQEA AELQHAIELQ  480
GRRLMGLQFL DLKNRGHHLL GSPVGSPSDG NGGCFSGNGN GVHLDDAIST IQDNSNLSSG  540
LFMGPYAAAS VISKEGKQEY QEEGGDGNGN GDGSPKQAVN SGEEGRRESG PGAAAASNVV  600
CEYQESGMEH THHLPGSPFA SPTKEASIAA AEQLTAHTGA MGNRARVMTD PINKWW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195377.10.0zinc finger CCCH domain-containing protein 53-like isoform X1
TrEMBLM8A9P80.0M8A9P8_TRIUA; Zinc finger CCCH domain-containing protein 22
STRINGTRIUR3_32041-P10.0(Triticum urartu)