PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32014-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 373aa    MW: 40624 Da    PI: 7.7277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32014-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12199241754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +Er+RR+++N++f +Lr ++P+       K++Ka+ L  A+ YI++L
  TRIUR3_32014-P1 199 TAERQRREKLNQRFYTLRAVVPNV-----SKMDKASLLGDAISYINEL 241
                      58*********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-91564IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.069192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17198266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17199263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-12200242No hitNo description
PfamPF000102.4E-9200241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAMVVDGAGP AGLASAPCER ARQAYTFGLR TMVCIPLGTG VLELGATEVI FQTNDSLGRI  60
RSLFNLNGGG GGSGSWPPIA PPPQEAETDP SVLWLADAPA GDMKESPPSV EISVSKPPQP  120
QPPQIHQFEN GSTSTLTENP GLSVHAQQPP PQQAAAAAQR QNQHQLQHQH QLQLQHQHNQ  180
GPFRRELNFS DFASNASVTA ERQRREKLNQ RFYTLRAVVP NVSKMDKASL LGDAISYINE  240
LRGKMTALES DKETLHSQIE ALKKERDARP AAPSSGMHDN GARCHAVEIE AKILGLEAMI  300
RVQCHKRNHP AAKLMTALRE LDLDVYHASV SVVKDIMIQQ VAVKMATRVY SQDQLNAALY  360
GRLAEPGTAM QIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-251982651077Transcription factor MYC2
5gnj_B1e-251982651077Transcription factor MYC2
5gnj_E1e-251982651077Transcription factor MYC2
5gnj_F1e-251982651077Transcription factor MYC2
5gnj_G1e-251982651077Transcription factor MYC2
5gnj_I1e-251982651077Transcription factor MYC2
5gnj_M1e-251982651077Transcription factor MYC2
5gnj_N1e-251982651077Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547960.0AK354796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011F06.
GenBankAK3578160.0AK357816.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062G16.
GenBankAK3598130.0AK359813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1103K10.
GenBankAK3604650.0AK360465.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165313.11e-115transcription factor MYC2-like
SwissprotQ336P51e-99MYC2_ORYSJ; Transcription factor MYC2
TrEMBLM7Z8G60.0M7Z8G6_TRIUA; Transcription factor MYC4
STRINGTRIUR3_32014-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-60bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]