PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_32002-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 171aa MW: 20135.1 Da PI: 9.6111 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.2 | 7.8e-15 | 44 | 81 | 16 | 53 |
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e++F+ ++yp+++ r++L+++lg++ +qVk+WFqN+R+ TRIUR3_32002-P1 44 ESVFRDCPYPDEKLRKDLSERLGMSAQQVKFWFQNKRT 81 789**********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.7E-8 | 31 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.68E-10 | 43 | 80 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-11 | 44 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 44 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.973 | 44 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.6E-12 | 44 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MYPTSTPSCT PFGGRNVPYS HSPFMDGLVD ACKVPYVYKS FGCESVFRDC PYPDEKLRKD 60 LSERLGMSAQ QVKFWFQNKR TFSKGKMQRW ETQNHWVENE RLKTEHQAIM LAMQNKTCLK 120 CRGVMVQTQD TSERQRLYTE NMRLKEELLH ATTYLKEGLR RNGMSLSWAR N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-111 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153975.1 | 7e-79 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
TrEMBL | M7ZK56 | 1e-127 | M7ZK56_TRIUA; Homeobox-leucine zipper protein ROC4 | ||||
STRING | TRIUR3_32002-P1 | 1e-128 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16772 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 5e-25 | homeodomain GLABROUS 1 |