PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31897-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 323aa    MW: 35034.4 Da    PI: 5.1448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31897-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14131177354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++++++k+L
  TRIUR3_31897-P1 131 KSHSEAERRRRERINSHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 177
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.168128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-12131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16132199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15132198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-6141180No hitNo description
Gene3DG3DSA:3.30.70.2604.9E-6215306No hitNo description
SuperFamilySSF550213.43E-5215304No hitNo description
CDDcd048733.97E-8215272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS  60
SSVGSFAYDH SGGASSSSDP LGFGAGLYMG HHGSPVHGMM MPPPFGASPF GDFGRMTAQE  120
IMDAKALAAS KSHSEAERRR RERINSHLAR LRSLLPNTTK TDKASLLAEV IQHVKELKRQ  180
TSEIREEACP LPTEADELTV DASSDEDGRL LVRASLCCDD RPDLLPDLIR ALKALRLRAL  240
KAEITTLGGR VKNVLVVTED DSIACDGDQQ DEDGGMQAPM SPQHAVASIQ EALRAVSHVF  300
NLQIPLDCMF ITRSDLYYLS LKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3771630.0AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189500.11e-157transcription factor bHLH30-like
SwissprotQ9S7Y14e-67BH030_ARATH; Transcription factor bHLH30
TrEMBLM8ARU10.0M8ARU1_TRIUA; Transcription factor bHLH30
STRINGTRIUR3_31897-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]