PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31731-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 232aa    MW: 26304.4 Da    PI: 7.0111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31731-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-194087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+d+++++G ++W++ +++ g+ R++k+c++rw +yl
  TRIUR3_31731-P1 40 RGAWSPEEDQRLADYIARHGHPNWRALPKHAGLLRCGKSCRLRWVNYL 87
                     89******************************99************97 PP
2Myb_DNA-binding506.7e-1693138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+++l
  TRIUR3_31731-P1  93 RGNFTADEEDLIIRLHQTLGNR-WSVIAAQLP-GRTDNEIKNVWHSHL 138
                      89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-243190IPR009057Homeodomain-like
PROSITE profilePS5129415.7013587IPR017930Myb domain
SuperFamilySSF466891.83E-2937134IPR009057Homeodomain-like
SMARTSM007171.8E-133989IPR001005SANT/Myb domain
PfamPF002492.1E-174087IPR001005SANT/Myb domain
CDDcd001674.65E-114287No hitNo description
PROSITE profilePS5129423.48588142IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2691142IPR009057Homeodomain-like
SMARTSM007175.6E-1492140IPR001005SANT/Myb domain
PfamPF002499.8E-1593138IPR001005SANT/Myb domain
CDDcd001673.32E-1095138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVNFFWRRRA GRRREEDRRT VSLDRFMGRA PCCEKDGLKR GAWSPEEDQR LADYIARHGH  60
PNWRALPKHA GLLRCGKSCR LRWVNYLSPD IKRGNFTADE EDLIIRLHQT LGNRWSVIAA  120
QLPGRTDNEI KNVWHSHLKK RLGDGLKPAA DHDAGGRASH GHQLVKEDTS SSEAVTDNSF  180
LSSTDVTGMI DLGATDEDLS LAMSSSSNWS DDQDFWIKML QEGGDIIDLP EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27381425108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519160.0JF951916.1 Triticum urartu clone TaMYB33 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157253.11e-115myb-related protein Myb4-like
SwissprotQ9LTC49e-71MYB15_ARATH; Transcription factor MYB15
TrEMBLM8A4G51e-170M8A4G5_TRIUA; Myb-related protein Myb4
STRINGTRIUR3_31731-P11e-171(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-72myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]