PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_31464-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 238aa MW: 25794.8 Da PI: 8.6379

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_31464-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	145.8	4.1e-45	9	148	79	217
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfA 169 aa+ +++++ P+l+f+hltaNqaIlea++g++rvHi+D+d+ +G+QWp+Llqa+ +R+ gpp++RiTg g+ + + l +tg+rL+ fA TRIUR3_31464-P1 9 AAHLAYNKIAPFLRFAHLTANQAILEAAAGARRVHIVDLDAAHGVQWPPLLQAICDRAdaaVGPPEVRITGAGP----DLDVLLRTGDRLRAFA 98 45556**************************************************988889*******....9*********** PP GRAS 170 eelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 ++l++pf+f++l + +l++ L+++p+E+laVn+vl lhrl + TRIUR3_31464-P1 99 SSLNLPFRFHPLllpCTAQLAADPAACLELHPDETLAVNCVLFLHRLS-GD 148 ********665555666677889*****************97.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.655	1	238	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-42	9	148	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGVAPASSAA HLAYNKIAPF LRFAHLTANQ AILEAAAGAR RVHIVDLDAA HGVQWPPLLQ 60 AICDRADAAV GPPEVRITGA GPDLDVLLRT GDRLRAFASS LNLPFRFHPL LLPCTAQLAA 120 DPAACLELHP DETLAVNCVL FLHRLSGDGE LTAFLRFRRD WRMGMCMHAR TRATILAILV 180 GGTREGEVDE GEDELKKRRL CMIGGRVAWE LERAPIAIGR SRRGSFGTRP GKPSTTTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-23	9	110	97	195	Protein SCARECROW
5b3h_A	8e-23	9	110	96	194	Protein SCARECROW
5b3h_D	8e-23	9	110	96	194	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF710617	0.0	JF710617.1 Hordeum vulgare lateral suppressor 2 (LAS2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196668.1	1e-103	protein MONOCULM 1-like
Swissprot	Q84MM9	4e-66	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	M7ZXM6	1e-170	M7ZXM6_TRIUA; Uncharacterized protein
STRING	TRIUR3_31464-P1	1e-171	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	5e-31	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]