PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_31391-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10824.3 Da PI: 9.5419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 14 | 58 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ +l+ +a + + + +W+ +a+ +g g+++ +++ ++ TRIUR3_31391-P1 14 WTPKQNKLFEQALAVHDRDtpdRWHNVAHAVGGGKSADDVRRYYE 58 *****************99************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.0E-7 | 10 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.31E-11 | 13 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.85E-6 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 7.7E-6 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASLSMSAAG RAGWTPKQNK LFEQALAVHD RDTPDRWHNV AHAVGGGKSA DDVRRYYELL 60 VRDVANIEAG KVPFPAYRPP CPGPNVGYEA DRLKHLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-26 | 5 | 98 | 3 | 92 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354412 | 1e-115 | AK354412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007C15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154612.1 | 2e-58 | protein RADIALIS-like 3 | ||||
Refseq | XP_020154876.1 | 2e-58 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 3e-28 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A446JDT1 | 7e-67 | A0A446JDT1_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZSV8 | 7e-67 | M7ZSV8_TRIUA; DnaJ homolog subfamily C member 2 | ||||
STRING | TRIUR3_31391-P1 | 1e-67 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-30 | RAD-like 1 |
Publications ? help Back to Top | |||
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