PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_31341-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 516aa MW: 57948.8 Da PI: 9.0238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.9 | 2.5e-33 | 65 | 231 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk.......................kvkaeekewyfF 61 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp+ v+ + + +fF TRIUR3_31341-P1 65 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLPEriiivygklclvshislfslchdGVTMDGLSKHFF 155 799************.99******999667544333..3444433445**********6699*******9999999887665444455688*** PP NAM 62 skrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +k+y+tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l TRIUR3_31341-P1 156 HRPSKAYTTGTRKRRKiqtecdvhKGETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 231 ***************75666664433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-35 | 57 | 250 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.371 | 65 | 250 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 66 | 231 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPGS LNGAIPHIVL MELTDVNCKK 60 DWLGLPAGVK FDPTDQELIE HLEAKVREEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPE 120 RIIIVYGKLC LVSHISLFSL CHDGVTMDGL SKHFFHRPSK AYTTGTRKRR KIQTECDVHK 180 GETRWHKTGK TRPVMANGRQ KGCKKILVLY TNFGKHRKPE KTNWVMHQYH LGDLEEEKEG 240 ELVVCKIFYQ TQPRQCSWSA SSDRGGAGGA VAIAAAAAVT VQEQRMRGSG SGSSSSRDHE 300 ALSATSYPAG YAMAAAVEMQ HLKHSGDHFS FAPFRKSFEE VGIGGDQVTS DQLGRSEHQQ 360 HTGQEQQPHR PDLATTAVPA TAFLVSRPTN PISATVPPPL QHTSVVLDHD QFHVPAIFLH 420 HDKFQNMQQQ QQHQQKIDRR RLRFLTPKRQ NGLTHTGLLT TKIIMDSSNK TGKYQIKQKQ 480 PRPLSLASMV SPSLNIRYCF LGECTTVNWE KNREIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190511.1 | 0.0 | uncharacterized protein LOC109776267 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-123 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | M7YUP5 | 0.0 | M7YUP5_TRIUA; NAC domain-containing protein 8 | ||||
STRING | TRIUR3_31341-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-104 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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