PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31341-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 516aa    MW: 57948.8 Da    PI: 9.0238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31341-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.92.5e-33652311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk.......................kvkaeekewyfF 61 
                      lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp+                        v+ +  + +fF
  TRIUR3_31341-P1  65 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLPEriiivygklclvshislfslchdGVTMDGLSKHFF 155
                      799************.99******999667544333..3444433445**********6699*******9999999887665444455688*** PP

              NAM  62 skrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++ +k+y+tg+rk+r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  TRIUR3_31341-P1 156 HRPSKAYTTGTRKRRKiqtecdvhKGETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 231
                      ***************75666664433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-3557250IPR003441NAC domain
PROSITE profilePS5100531.37165250IPR003441NAC domain
PfamPF023651.2E-1566231IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPGS LNGAIPHIVL MELTDVNCKK  60
DWLGLPAGVK FDPTDQELIE HLEAKVREEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPE  120
RIIIVYGKLC LVSHISLFSL CHDGVTMDGL SKHFFHRPSK AYTTGTRKRR KIQTECDVHK  180
GETRWHKTGK TRPVMANGRQ KGCKKILVLY TNFGKHRKPE KTNWVMHQYH LGDLEEEKEG  240
ELVVCKIFYQ TQPRQCSWSA SSDRGGAGGA VAIAAAAAVT VQEQRMRGSG SGSSSSRDHE  300
ALSATSYPAG YAMAAAVEMQ HLKHSGDHFS FAPFRKSFEE VGIGGDQVTS DQLGRSEHQQ  360
HTGQEQQPHR PDLATTAVPA TAFLVSRPTN PISATVPPPL QHTSVVLDHD QFHVPAIFLH  420
HDKFQNMQQQ QQHQQKIDRR RLRFLTPKRQ NGLTHTGLLT TKIIMDSSNK TGKYQIKQKQ  480
PRPLSLASMV SPSLNIRYCF LGECTTVNWE KNREIS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190511.10.0uncharacterized protein LOC109776267 isoform X1
SwissprotQ9M0F81e-123NAC75_ARATH; NAC domain-containing protein 75
TrEMBLM7YUP50.0M7YUP5_TRIUA; NAC domain-containing protein 8
STRINGTRIUR3_31341-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-104NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]