PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_31251-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 607aa MW: 67318.9 Da PI: 4.3484 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.1 | 4.4e-08 | 9 | 45 | 1 | 43 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 s+++GVr +++g + AeI+ + kr lg+f+taeeAa TRIUR3_31251-P1 9 SDFRGVR-ERRSGAFSAEIWF------HeKRLVLGTFDTAEEAA 45 789***9.7779*********......44**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.03E-12 | 9 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-10 | 10 | 49 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.746 | 10 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-4 | 10 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-8 | 10 | 46 | IPR016177 | DNA-binding domain |
SuperFamily | SSF56784 | 5.64E-53 | 430 | 602 | IPR023214 | HAD-like domain |
Gene3D | G3DSA:3.40.50.1000 | 3.2E-60 | 430 | 602 | IPR023214 | HAD-like domain |
PROSITE profile | PS50969 | 44.694 | 432 | 591 | IPR004274 | FCP1 homology domain |
SMART | SM00577 | 1.6E-59 | 435 | 579 | IPR004274 | FCP1 homology domain |
TIGRFAMs | TIGR02251 | 1.3E-63 | 436 | 601 | IPR011948 | Dullard phosphatase domain, eukaryotic |
Pfam | PF03031 | 2.3E-51 | 438 | 598 | IPR004274 | FCP1 homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016311 | Biological Process | dephosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016791 | Molecular Function | phosphatase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MSIRRLGASD FRGVRERRSG AFSAEIWFHE KRLVLGTFDT AEEAACYKEG ASSTLCRPPT 60 LAASAPPCRS AAWALRIFAD VLGPRLEFLA RGDAAGIDSL VLSRPGGLGF GRFVGKSALY 120 SLTGYGFYEV RLISSLPSKT ELRQLWHSEL LIKMPALRMK RKFDDDIFAN EFDTKSMKSM 180 KISNFQVDEF EQAFVLNSSY KDRQDEPEST TQLAGQDIRV TEFSGLHAVL GGTSVALLKP 240 KIYPIDMQDL ISETVVPPNL EPDSLSNNDD GKSQSNVVNT GDKEFADEDV NSAAQDICAV 300 NNHEKSLGSN LDCSLLDIYN PDDAFPFLFD VPTGLLASYS TFCDEFVPID SLIDMSGICG 360 VFPLNESTVE GGIGNEPCPS PGDMCFNNSG GECFSHSEVL DWLNPYMDEE DLPNLIDYTE 420 LSSNAACVSK EQGARKVTLV LDLDETLVHS TMEHCDDADF SFPVSFGMKE HLVYVRKRPH 480 LHMFLQKMAE MFDVVIFTAS QSVYADQLLD RLDPENTLFS KRFFRESCVF TESGYTKDLT 540 VIGVDLAKAA IIDNTPQVFQ LQVNNGIPIE SWYNNPFDEG LPQLIPFLET LAVADDVRPI 600 IAKRFGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1t9z_A | 2e-43 | 429 | 603 | 8 | 181 | Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375589 | 0.0 | AK375589.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3098N24. | |||
GenBank | AY341861 | 0.0 | AY341861.1 Hordeum vulgare subsp. vulgare CTD-phosphatase-like protein (Cpl1) mRNA, complete cds; alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158078.1 | 0.0 | CTD small phosphatase-like protein 2-A | ||||
Refseq | XP_020158079.1 | 0.0 | CTD small phosphatase-like protein 2-A | ||||
TrEMBL | M7YNU5 | 0.0 | M7YNU5_TRIUA; CTD small phosphatase-like protein 2 | ||||
STRING | TRIUR3_31251-P1 | 0.0 | (Triticum urartu) |