PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31251-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 607aa    MW: 67318.9 Da    PI: 4.3484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31251-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.14.4e-08945143
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43
                     s+++GVr  +++g + AeI+       + kr  lg+f+taeeAa
  TRIUR3_31251-P1  9 SDFRGVR-ERRSGAFSAEIWF------HeKRLVLGTFDTAEEAA 45
                     789***9.7779*********......44**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.03E-12945No hitNo description
Gene3DG3DSA:3.30.730.105.3E-101049IPR001471AP2/ERF domain
PROSITE profilePS5103211.7461066IPR001471AP2/ERF domain
SMARTSM003801.2E-41064IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-81046IPR016177DNA-binding domain
SuperFamilySSF567845.64E-53430602IPR023214HAD-like domain
Gene3DG3DSA:3.40.50.10003.2E-60430602IPR023214HAD-like domain
PROSITE profilePS5096944.694432591IPR004274FCP1 homology domain
SMARTSM005771.6E-59435579IPR004274FCP1 homology domain
TIGRFAMsTIGR022511.3E-63436601IPR011948Dullard phosphatase domain, eukaryotic
PfamPF030312.3E-51438598IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016311Biological Processdephosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016791Molecular Functionphosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSIRRLGASD FRGVRERRSG AFSAEIWFHE KRLVLGTFDT AEEAACYKEG ASSTLCRPPT  60
LAASAPPCRS AAWALRIFAD VLGPRLEFLA RGDAAGIDSL VLSRPGGLGF GRFVGKSALY  120
SLTGYGFYEV RLISSLPSKT ELRQLWHSEL LIKMPALRMK RKFDDDIFAN EFDTKSMKSM  180
KISNFQVDEF EQAFVLNSSY KDRQDEPEST TQLAGQDIRV TEFSGLHAVL GGTSVALLKP  240
KIYPIDMQDL ISETVVPPNL EPDSLSNNDD GKSQSNVVNT GDKEFADEDV NSAAQDICAV  300
NNHEKSLGSN LDCSLLDIYN PDDAFPFLFD VPTGLLASYS TFCDEFVPID SLIDMSGICG  360
VFPLNESTVE GGIGNEPCPS PGDMCFNNSG GECFSHSEVL DWLNPYMDEE DLPNLIDYTE  420
LSSNAACVSK EQGARKVTLV LDLDETLVHS TMEHCDDADF SFPVSFGMKE HLVYVRKRPH  480
LHMFLQKMAE MFDVVIFTAS QSVYADQLLD RLDPENTLFS KRFFRESCVF TESGYTKDLT  540
VIGVDLAKAA IIDNTPQVFQ LQVNNGIPIE SWYNNPFDEG LPQLIPFLET LAVADDVRPI  600
IAKRFGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1t9z_A2e-434296038181Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755890.0AK375589.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3098N24.
GenBankAY3418610.0AY341861.1 Hordeum vulgare subsp. vulgare CTD-phosphatase-like protein (Cpl1) mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158078.10.0CTD small phosphatase-like protein 2-A
RefseqXP_020158079.10.0CTD small phosphatase-like protein 2-A
TrEMBLM7YNU50.0M7YNU5_TRIUA; CTD small phosphatase-like protein 2
STRINGTRIUR3_31251-P10.0(Triticum urartu)