PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_30901-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 1445aa MW: 162953 Da PI: 6.0295 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l TRIUR3_30901-P1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.2 | 2.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l TRIUR3_30901-P1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 7.0E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 9.39E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.04E-20 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 7.66E-31 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.0E-59 | 406 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Pfam | PF04827 | 1.0E-41 | 1289 | 1396 | IPR006912 | Harbinger transposase-derived protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 1445 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHK KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLELVQFPT 240 TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDIELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRTPGGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEMQTPNPM ATPLASPGPG 420 VTPRIGMTPS RDGNSFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRKGLRSGFA 480 SIPQPKNEYQ IVMPPITEEN EESEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS 540 LPRPPAASVE ILRQSLIKGG ESRSTFVPPT SLEQAVELIN EELLRLLEHD NAKYPLDEQI 600 QRDKKKGSKR QANTAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS 660 HDACQEDLMF FPTNNSYGLA SVAGNTDKIS ALQHEFEMVK KRMDDEAKKA SRLEQKIKLL 720 TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAGAYRVRNL AEEVNKQKAL 780 EQTLQSRYGD LLSGYQSIQG QLEEHKRLLN LQKEAIEAEN RAKEEEAAAQ NRAKEEEAAA 840 QSRAKEEAAA QNRAKEEEAA ALNCGKVEEA SAQDGAAEEE NERKNHGIEE ESGQTRVANE 900 EAAGSKEIIG DQMDVDNADA AGELVGPIPP LPDAQVDNDG ASVEQSTSNA KSGENVAMNE 960 GAVDKVDSSK LDGQDNTNGS MDVDAGSQEE GNNVPAAPDA TIIKLSRMKR VTWSLNETSS 1020 TYLICGACHK HDEEAASHWF RPSAAGDSGQ IRGTESRRGG APHPDPPSRF IGFRIRRAAP 1080 PLVAVAAPGS TAVELPPKPP MELSPCEKFL FEDSSDSDGS DVETLLVNYR QQTLVMALTV 1140 KEHEDENRKR RQGSTIGHLW IPRNRHLGNE MLMQDYFADN PTYPPHLFRR RYRMRRSLFV 1200 KIVQACETNC RYFTQRRNAA SLKEFSAYQK ISAAMQVIAY GIPADYADEY LRIGEDTTIE 1260 SVCRFAKVII RVFGPEYLRA PNEEDTKKLS SGDAPACNYT INGPKYTKGY YLADDIYPSW 1320 CTFFKSIKDP QTRKQCKFAR VQEAARKDIE RALGVLQSRF AIVRGPACFW DRRSLKNIIT 1380 CCVILHNMIL KDERGMNLEF FYDNVGSRVK PARDPNHIRA FLHTYKEIEN ANTHFQLQED 1440 FIEHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 802 | 3 | 802 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRHKKRKRK |
2 | 199 | 204 | KKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177615.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M7ZV05 | 0.0 | M7ZV05_TRIUA; Cell division cycle 5-like protein | ||||
STRING | TRIUR3_30901-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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