PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30866-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 292aa    MW: 32120.1 Da    PI: 6.6343
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30866-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.4e-102112452155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps++e+  LA+++gL+++q+ +WF N+R ++
  TRIUR3_30866-P1 211 KWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 245
                      569*****************************885 PP
2ELK43.65.9e-15165186122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKhqLlrKY+gy gsL+qEF+
  TRIUR3_30866-P1 165 ELKHQLLRKYGGYVGSLRQEFC 186
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.8E-2883134IPR005541KNOX2
PfamPF037913.0E-2487133IPR005541KNOX2
SMARTSM011889.7E-8165186IPR005539ELK domain
PROSITE profilePS5121311.453165185IPR005539ELK domain
PfamPF037897.6E-11165186IPR005539ELK domain
PROSITE profilePS5007112.795185248IPR001356Homeobox domain
SuperFamilySSF466892.1E-19187257IPR009057Homeodomain-like
SMARTSM003893.0E-13187252IPR001356Homeobox domain
CDDcd000868.69E-15188248No hitNo description
Gene3DG3DSA:1.10.10.607.1E-28190251IPR009057Homeodomain-like
PfamPF059201.5E-16205244IPR008422Homeobox KN domain
PROSITE patternPS000270223246IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASFLQLPPP SASSPSPELA GEQHGSAAPG RRPAGGAGEA LGRGGAGGGR GWPGRGRVGA  60
PPEVLERLSA VAAKLDAGHG RGKHESPRPD PELDQFMEAY CNMLAKYREE LARPIQEATE  120
FFKSVETQLD SITFTDNNCE GAGSSEDELD TSCVEEIDPS AEDKELKHQL LRKYGGYVGS  180
LRQEFCKRRK KGKLPKEARQ KLLHWWELHS KWPYPSETEK IALAESTGLD QKQINNWFIN  240
QRKRHWKPAP EDMPFSVMDG GVGVSFLPAS QGPALYMDRA PFMVDGMYRL GS
Functional Description ? help Back to Top
Source Description
UniProtPlays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434550.0AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156617.11e-166homeobox protein rough sheath 1-like
SwissprotQ418531e-102RSH1_MAIZE; Homeobox protein rough sheath 1
TrEMBLM8AIF60.0M8AIF6_TRIUA; Homeobox protein rough sheath 1
STRINGTRIUR3_30866-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-78KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Schneeberger RG,Becraft PW,Hake S,Freeling M
    Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
    Genes Dev., 1995. 9(18): p. 2292-304
    [PMID:7557382]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]