PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30761-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 120aa    MW: 13428.4 Da    PI: 5.1887
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30761-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB140.83.4e-4419110193
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      vreqdrflP+an+s imkk++ an+ki+kdaketv+ec+sefi f++se sdkcqrek ktin ddllwa+atlGf++y+ep kvyl++yre 
  TRIUR3_30761-P1  19 VREQDRFLPVANISSIMKKAILANGKIAKDAKETVRECISEFI-FIASEVSDKCQREKCKTINIDDLLWAMATLGFQEYIEPPKVYLQNYREG 110
                      69****************************************9.***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-3818111IPR009072Histone-fold
SuperFamilySSF471134.39E-2622110IPR009072Histone-fold
PfamPF008082.2E-172588IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSDVPASPPG GDNGGFGGVR EQDRFLPVAN ISSIMKKAIL ANGKIAKDAK ETVRECISEF  60
IFIASEVSDK CQREKCKTIN IDDLLWAMAT LGFQEYIEPP KVYLQNYREG HAHLAMWDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-3620109393NF-YB
4awl_B4e-3620109494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-3620109494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090781e-106BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBankKM0787351e-106KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBankKM0787361e-106KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBankKM0787371e-106KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150941.19e-62nuclear transcription factor Y subunit B-like
SwissprotP252099e-50NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLT1NJC03e-85T1NJC0_TRIUA; Uncharacterized protein
STRINGTRIUR3_30761-P14e-86(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.71e-52nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]