PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30753-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 364aa    MW: 39721.9 Da    PI: 4.6215
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30753-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-38441431100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+l++l++e  ++am++l+y+Ae+ra dPv G++++i +l++  e l+ael
  TRIUR3_30753-P1  44 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLRRLKPELCDAAMQTLIYQAEMRAMDPVGGCCSMIIDLEHTSELLSAEL 137
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+l+++
  TRIUR3_30753-P1 138 AALQQH 143
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.47143144IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3744141IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTSSSAASSS HLHITITNPR HPTSVSPRSG GSGGGGGGGT TNQACAACKY QRRKCNPDCP  60
LAPYFPADQQ RRFLNAHRLF GVSNILKTLR RLKPELCDAA MQTLIYQAEM RAMDPVGGCC  120
SMIIDLEHTS ELLSAELAAL QQHLDMCRQA ASGVAGGDVM DGPCADLEVT SSNHQPKQLL  180
LHADQDQVVD ALYVAQEGAD PVMQNGADHD DSRQPQYHGG QQQQQQQQLY DYFYYEATGA  240
GSDEAGRKPS GSGVDINVDV MQHFDYDSSC EVDDHHKVDQ LEPMISSSLE EHYQIGQKEY  300
EMKVASFVDV LDVRPELQAV DGNADIGIKE ELQEEDPKNN DDDIALRKAA HMAESSHCRL  360
GLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-224515612121LOB family transfactor Ramosa2.1
5ly0_B3e-224515612121LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12839SGGSGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151955.10.0uncharacterized protein LOC109737153
TrEMBLM8AT840.0M8AT84_TRIUA; Uncharacterized protein
STRINGTRIUR3_30753-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-32LOB domain-containing protein 22