PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30726-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 337aa    MW: 37713.6 Da    PI: 6.7906
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30726-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.5e-062642902955
                      HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  29 ereeLAkklgLterqVkvWFqNrRake 55 
                      e++ LA+++gL+ +q+ +WF N+R ++
  TRIUR3_30726-P1 264 EKAALAESTGLDAKQINNWFINQRKRH 290
                      6789********************885 PP
2ELK33.41e-11201222122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sL+  +s
  TRIUR3_30726-P1 201 ELKSHLLNKYSGYLSSLWRDLS 222
                      9*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.2E-1956100IPR005540KNOX1
PfamPF037902.2E-205796IPR005540KNOX1
SMARTSM012568.1E-27105156IPR005541KNOX2
PfamPF037913.0E-23109155IPR005541KNOX2
PROSITE profilePS512139.655201221IPR005539ELK domain
SMARTSM011881.5E-6201222IPR005539ELK domain
PfamPF037895.3E-9201222IPR005539ELK domain
SuperFamilySSF466893.25E-14222307IPR009057Homeodomain-like
SMARTSM003891.9E-4223297IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-23226294IPR009057Homeodomain-like
CDDcd000861.56E-9230293No hitNo description
PfamPF059202.0E-10241289IPR008422Homeobox KN domain
PROSITE profilePS500719.556264293IPR001356Homeobox domain
PROSITE patternPS000270268291IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDQFPLLPSG SKANTSTPLY LTLDNTTSGA STSPVPEPAP APPEPSRQSN HDRGTDTVKA  60
KIMSHPLYPA LLTAFIECQK VGAPPEIVGR LSALAGDLDS DPGDRRQDPV PDPELDEFME  120
TYCDVLVRYK QELTRPVQEA DQFFRAMEAQ MESFTLACMA SPATVTKVRG TYSVMQEKDE  180
QEIGDVGGLP EITSHCAEDK ELKSHLLNKY SGYLSSLWRD LSKKKKKGKL PRDARQKLLH  240
WWQLHYRWPY PSELMACMPR QELEKAALAE STGLDAKQIN NWFINQRKRH WKPTPPAMEY  300
MSQQQHPYGG PSSSSSAPFR TTDGHYFAGG SAYPRGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440462e-99AF544046.1 Hordeum vulgare knotted 2 (kn2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175441.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-143KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLM7ZT200.0M7ZT20_TRIUA; Homeobox protein knotted-1-like 4
STRINGTRIUR3_30726-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-81KNOTTED-like from Arabidopsis thaliana