PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_30678-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 379aa MW: 41028.9 Da PI: 9.2392

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_30678-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.7	6.9e-35	130	186	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprC+stntkfCy+nnysl+qPr+fC++C ryWt+GG lrnvPvGgg r++ k+ TRIUR3_30678-P1 130 GLNCPRCESTNTKFCYFNNYSLTQPRHFCRSCSRYWTRGGVLRNVPVGGGYRRHAKR 186 579***********************************************9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	111	185	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.959	131	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-30	131	185	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	133	169	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MAIMEINRPR GGALLKRRRL GSPAMIFLPA FLDSSDFWNT DHNQLQLQQI GTSTHSTTTS 60 SPNGPGDGGC NNNNPKGFMA TTGADYGVAG GGDDGCGGAG DGDCSRGRNN KSISMSERAR 120 LARLPHPVPG LNCPRCESTN TKFCYFNNYS LTQPRHFCRS CSRYWTRGGV LRNVPVGGGY 180 RRHAKRRAKP KVVSATSRAS TVGKSSMTPT MSSSTTYATG TDISPPRLQY PIFGSTPSHD 240 SQFSDIFDPA NLGLGFPVRL LFAESDAYTV DGCAHHHHHH AHGNGMEQLL EAQNSFPFMH 300 AMDHHMSGLP AEAMPITMAT MQGMFHLGLQ SVRGGHGDEI AGQQLHYPLA KRNHKHQDYA 360 SSRGMHRDVV NGNGTGGYI

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MAIMEINRPR GGALLKRRRL GSPAMIFLPA FLDSSDFWNT DHNQLQLQQI GTSTHSTTTS  60
SPNGPGDGGC NNNNPKGFMA TTGADYGVAG GGDDGCGGAG DGDCSRGRNN KSISMSERAR  120
LARLPHPVPG LNCPRCESTN TKFCYFNNYS LTQPRHFCRS CSRYWTRGGV LRNVPVGGGY  180
RRHAKRRAKP KVVSATSRAS TVGKSSMTPT MSSSTTYATG TDISPPRLQY PIFGSTPSHD  240
SQFSDIFDPA NLGLGFPVRL LFAESDAYTV DGCAHHHHHH AHGNGMEQLL EAQNSFPFMH  300
AMDHHMSGLP AEAMPITMAT MQGMFHLGLQ SVRGGHGDEI AGQQLHYPLA KRNHKHQDYA  360
SSRGMHRDVV NGNGTGGYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	19	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181317.1	1e-166	dof zinc finger protein DOF5.1-like
TrEMBL	M8AIU4	0.0	M8AIU4_TRIUA; Dof zinc finger protein DOF3.6
STRING	TRIUR3_30678-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-38	OBF-binding protein 3