PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30677-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 230aa    MW: 24398.2 Da    PI: 4.6514
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30677-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.41.5e-4622116195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdr++Pianv+rim+++lPa+akis++ake +qecvsefisfvt+ea+++c+ ++rkt+n++d++wal  lGf+dyv pl+v+l++ r+ e
  TRIUR3_30677-P1  22 VREQDRLMPIANVIRIMRRALPAHAKISDEAKEAIQECVSEFISFVTGEANERCRMQRRKTVNAEDIVWALNRLGFDDYVVPLSVFLERMRDPE 115
                      69*****************************************************************************************977 PP

            NF-YB  95 g 95 
                      +
  TRIUR3_30677-P1 116 A 116
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-4418122IPR009072Histone-fold
SuperFamilySSF471134.48E-3425131IPR009072Histone-fold
PfamPF008083.8E-242992IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-145674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.9E-147593No hitNo description
PRINTSPR006152.9E-1494112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MENDGVPNGP AAPAPTQATP VVREQDRLMP IANVIRIMRR ALPAHAKISD EAKEAIQECV  60
SEFISFVTGE ANERCRMQRR KTVNAEDIVW ALNRLGFDDY VVPLSVFLER MRDPEAGTGG  120
AAAGYSRAVM SAPPRAASHV IHAVPLQAQR PMYATPAPVQ VFGGERVMGQ QYYGYGYGEG  180
AYGAGSSNGG AGIGDEESSS NGVPAPGEGK GEPEPEPTAE ESQDKPVQSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4822113697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027900.0GU902790.1 Triticum monococcum nuclear transcription factor Y subunit B9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178161.11e-121nuclear transcription factor Y subunit B-8-like
TrEMBLM7YUP21e-166M7YUP2_TRIUA; Nuclear transcription factor Y subunit B-9
STRINGTRIUR3_30677-P11e-167(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-49nuclear factor Y, subunit B6